Xenopus tropicalis (tropical clawed frog): 100496866
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Entry
100496866 CDS
T01011
Symbol
mtrex
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100496866 (mtrex)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xtr03019
]
100496866 (mtrex)
03041 Spliceosome [BR:
xtr03041
]
100496866 (mtrex)
03009 Ribosome biogenesis [BR:
xtr03009
]
100496866 (mtrex)
03016 Transfer RNA biogenesis [BR:
xtr03016
]
100496866 (mtrex)
Enzymes [BR:
xtr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100496866 (mtrex)
Messenger RNA biogenesis [BR:
xtr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
100496866 (mtrex)
Spliceosome [BR:
xtr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
100496866 (mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
100496866 (mtrex)
Ribosome biogenesis [BR:
xtr03009
]
Eukaryotic type
Pre-60S particles
Helicases
100496866 (mtrex)
Transfer RNA biogenesis [BR:
xtr03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
100496866 (mtrex)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
Helicase_dom4_arc
nSTAND3
AAA_22
Mt_ATP-synt_D
Motif
Other DBs
NCBI-GeneID:
100496866
NCBI-ProteinID:
XP_002941157
Xenbase:
XB-GENE-1013876
UniProt:
A0A6I8Q447
LinkDB
All DBs
Position
1:complement(191550190..191613519)
Genome browser
AA seq
1031 aa
AA seq
DB search
MADAFGDELFSVFEEETPATSKSALPAAAGKTGKRNAKSKGAGAGPAPKAKREADCIDGP
DEVVFGKKPKLEISSADDINLADLMPRIKVQEVETVEGCTHEVALPADEEYVPLKPRVGK
AAKEYPFVLDAFQREAILCIDNNQSVLVSAHTSAGKTVCAEYSIALALREKQRVIFTSPI
KALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVIF
DEIHYMRDAERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIYTDY
RPTPLQHYIFPSGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKGGTKGP
SNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMSKLDFNTDEEKKMVEEVFNNAIDCL
SDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLLKALFATETFAMGINM
PARTVLFTSARKFDGKDFRWISSGEYIQMSGRAGRRGMDERGIVILMVDEKMSPTVGKQL
LKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVAEKVKKLEEQ
YNSIQIPNEENVVTYYKIRQQLAKLGKEIEDYIHKPKYCLPFMQPGRLVKVKSEDDDFGW
GAVVNFSKKSNVKPNSGELDPLYVVEVLINCSKESVKNAATEAAKPARPDERGEMQVVPV
MLHTLCAISSVRLYIPKDLRTTDNRQSVLKSIQEVQKRFPDGVPLLDPIDDMGIKDPGLK
KVVQKTEAFEHRMYSHPLNNDPNLESLYKLCEKKAQIAVDIRAAKRELKKARTVLQMDEL
KCRKRVLRRLGFATASDVIEMKGRVACEISSADELLLTEMMFNGLFNDLTAEQATALLSC
FVFQENSSEMPKLTEQLAGPLRQMQETARRIAKVSAEAKLEVDEETYLGSFRSNLMDVLY
TWANGATFAQICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGITKIK
RDIVFAASLYL
NT seq
3096 nt
NT seq
+upstream
nt +downstream
nt
atggctgacgcgtttggagacgagttgttcagtgtgttcgaagaagagactcccgcaacc
agcaaaagcgcccttcctgcggcagccggcaagactggcaaacgcaatgccaaatctaaa
ggtgccggggcaggtcctgctccaaaggctaagcgggaggccgactgcattgatggaccc
gacgaggttgtttttgggaagaagccaaaactggagatatcatctgctgatgacataaac
cttgcagacctaatgccccgtattaaagttcaagaagtagaaacagtggaaggctgtacc
catgaggttgcacttcctgcagatgaagaatacgtgcccttaaaaccacgagttggaaaa
gcagcaaaggaatatccatttgttctggatgccttccaaagagaagcaattctgtgtatc
gataacaaccagtctgttctagtgtccgctcacacgtctgctgggaaaactgtttgtgct
gaatattctattgcattggctctgcgtgaaaaacaacgtgtcattttcactagtcctatc
aaagctctcagcaaccagaaatacagagagatgtacgaggaattccaagatgtggggtta
atgacaggagatgtcaccatcaaccctacggcctcctgcctggttatgacaactgagatt
ttgcgcagcatgttatacaggggatctgaagtcatgcgtgaagtggcctgggttattttt
gatgagattcattatatgagagatgcagaaagaggagtagtctgggaggagacaattata
cttctgccagataatgtgcactatgtgttcctgtcagcaaccatcccaaatgcacggcag
tttgctgaatggatctgtcaccttcataaacagccttgtcacgtcatttacacagactat
cgacccactcctctacaacattacatctttccatcagggggagatggactccatctggtt
gtggatgaaaatggagacttcagggaagataactttaatacagcaatgcaggttctcaga
gatgcgggggacttggctaaaggagaccagaaaggacgcaaaggaggaacaaaaggccct
tctaatgtgttcaagattgtaaagatgatcatggagagaaacttccaacctgttatcatc
tttagcttcagtaagaaggactgtgaggcctatgcactacaaatgtccaaactggatttt
aatacagatgaagagaaaaaaatggttgaagaagtatttaataatgcaatagactgtctc
tctgatgaagataagaagctcccacaggttgaacatgtactgcctcttcttaagcggggc
attgggattcatcatggtgggctacttcctatactgaaggagaccattgagatccttttc
tcagaaggcttactgaaggctttgtttgccacagagacatttgccatgggtataaatatg
ccagccaggactgttctatttaccagtgcacggaaatttgacggaaaagatttccgttgg
atctcatcaggtgaatacattcagatgtctggccgtgctgggagacgtggtatggatgaa
aggggaatagtcattctcatggttgatgagaaaatgagcccaacagtcggaaaacagctg
ctaaagggctcagctgatccgctgaacagtgcttttcatctgacatacaacatggtgtta
aatttgttgcgtgtagaggaaattaaccctgagtacatgttggagaagtccttctaccag
ttccaacattacagagccatccctggagttgctgaaaaggttaaaaaactagaggaacag
tataacagtatacagattcccaatgaagaaaatgttgttacatactacaaaatccgtcag
cagcttgccaaacttgggaaagagattgaagattacatccataaacccaagtactgcctg
ccctttatgcagcctggtaggctggttaaggtaaaaagcgaggatgatgattttggatgg
ggtgcagtagtcaacttctccaagaaatcaaacgtaaagcccaattctggtgaactggac
ccactctatgtggtagaagtacttatcaactgctcaaaagagagtgtaaaaaatgctgct
acggaagctgccaaaccagcgaggccagatgagagaggcgagatgcaggttgtcccagta
atgctccacacgctctgtgccataagtagcgtgcgtctgtacattcctaaggatctccgg
accactgacaacagacagagtgtgcttaaatctatccaggaggtacagaagcgctttcct
gatggggtgccgttgttagatcccatcgatgacatgggaatcaaagatcccgggttgaaa
aaagttgtccagaagacagaagcttttgaacatagaatgtattcccatccactcaataat
gacccaaacctggagtctctgtacaagctatgtgagaagaaagcacagattgccgtagat
attcgagcagcaaagcgggagctaaagaaagcacgaacagtgttacagatggatgagttg
aagtgtcggaaacgagtgctgagacgactgggctttgccactgcttctgatgttattgaa
atgaaaggccgagtggcctgtgaaataagcagtgctgatgaactcctccttactgagatg
atgtttaatgggctctttaacgatctgacagcagaacaagcaaccgctctcctcagctgc
tttgtgtttcaagaaaattccagtgaaatgccgaaactgacagagcaattggcaggacca
ctgcgtcagatgcaggaaactgctaggagaattgctaaagtttcggcagaagctaaatta
gaggtggatgaagagacgtacctgggttctttccgttccaacctcatggatgtgttgtac
acttgggcgaacggggcaacatttgcacagatttgcaagatgactgatgtgtttgaaggt
agtataatccgttgcatgaggcgacttgaggaattgctgaggcaaatgtgtcaagcagct
aaagccattgggaacacagaactagagaacaaatttgcagaaggaattacaaaaatcaaa
agggatattgtgtttgctgcaagtctttatctatag
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integrated database retrieval system
