Xenopus tropicalis (tropical clawed frog): 100497125
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Entry
100497125 CDS
T01011
Symbol
taf1a
Name
(RefSeq) TATA box-binding protein-associated factor RNA polymerase I subunit A
KO
K15212
TATA box-binding protein-associated factor RNA polymerase I subunit A
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xtr03021
]
100497125 (taf1a)
Transcription machinery [BR:
xtr03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
100497125 (taf1a)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF1_subA
SPO22
Motif
Other DBs
NCBI-GeneID:
100497125
NCBI-ProteinID:
XP_002940745
Xenbase:
XB-GENE-6045985
UniProt:
F7DM03
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All DBs
Position
5:9683682..9698427
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AA seq
463 aa
AA seq
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MDGSSERSAEREDSEEGPSEEEVLGLQLPVPRRKPHGYLSKGTTYRHTVDLCFCLIHEAI
AKSQWEKAAELMLSYLQTLEDGTTERQRCAPEIIWRLGSEILLNHPRSTVEDVGLFYERI
KNVGIRSYLKISLEHVFFLLCNGSKDEALLAATTAESWKYGRASLSQENTIKLIQAYRGI
LDYRSWLEKKAAITQGDMSYATQLNAVKEMCIFQQQAKAAFQGILKFPGVWDPFVLCYID
LLESSEEKEEVEQILRDYAYDPKFPANPNAFVYLYEFLKRNEASNEALINVLMDLHTRVP
SHKLMLEFCDLLKQSESEEHHQLALKVLFDLLDFSGWGYSMEAWRQIGKRLKTSLKRNQD
LWIEDQWKSRRSWWPLYHFTEFHAKKEWKEIPKLAMKKALAAGILLGPGCAYYKAVCRLG
RKTKMKKVRAMKTFLKNHSCSLVERRTQRQIVFFTCRKTTAAS
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atggatgggagcagcgaacgcagtgcggaaagggaagattccgaggagggaccgagtgag
gaggaggttctggggctccagctgccggtgccaagaaggaaaccccacgggtatctttca
aaaggaaccacttaccgtcacaccgtagacctgtgcttctgcctcattcatgaagccata
gccaagagccagtgggagaaagcggctgaacttatgctgagctatttgcagactcttgaa
gatgggaccaccgagaggcagaggtgtgctccggagatcatttggagacttggcagtgag
atcctcctaaatcaccctagaagtacagtggaagatgtcggcttgttctacgagcgaatt
aagaatgtcggcataagaagctacctcaagataagcctagaacatgtcttttttctgctg
tgcaatggcagcaaggatgaggctcttttagccgcaactactgctgaaagctggaagtat
ggccgggcctctctctcccaggagaacacgatcaagctcattcaggcatacagagggatt
ctagactaccggtcttggctggagaagaaggcggcaattactcagggggatatgagttat
gcaacccaattaaatgctgtcaaggaaatgtgtatcttccagcaacaagcaaaggctgct
ttccaaggaattcttaagtttcctggtgtttgggatccttttgtcctgtgctacatagat
cttttagagtcttctgaagaaaaggaggaggtggaacagatcctgagggactatgcatat
gatcccaaattccctgccaatcccaatgcatttgtgtatttgtacgagtttctaaaaagg
aatgaggcctcaaacgaagctcttataaatgtgttaatggacttgcacaccagggttcca
tcgcacaaactcatgctggaattctgtgacctcctgaagcaatctgagtcagaagagcat
caccaactcgcgctgaaagttctgtttgatctcctggatttttccggttgggggtacagt
atggaagcttggcggcaaataggaaagcggctcaagacaagtctgaaaagaaatcaggac
ttgtggattgaggatcagtggaaatcaagacgcagctggtggcctctttaccattttact
gagttccatgcaaaaaaagaatggaaggaaatcccgaaactggcaatgaagaaagccttg
gctgctgggattttattaggaccaggctgcgcctattataaagctgtttgtcgcctcggt
agaaaaaccaagatgaaaaaggtgagagccatgaagacgtttctgaagaatcacagctgt
tccttagtggaacgacggacccagcgccagattgtgttctttacgtgccgaaaaactaca
gctgcttcttag
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