Xenopus tropicalis (tropical clawed frog): 100497353
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Entry
100497353 CDS
T01011
Symbol
srf
Name
(RefSeq) serum response factor isoform X1
KO
K04378
serum response factor
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04010
MAPK signaling pathway
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
100497353 (srf)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xtr03000
]
100497353 (srf)
Transcription factors [BR:
xtr03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
MADS-box responders to external signals
100497353 (srf)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SRF-TF
Motif
Other DBs
NCBI-GeneID:
100497353
NCBI-ProteinID:
XP_031758242
Xenbase:
XB-GENE-482036
UniProt:
A0A803KEQ1
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Position
5:complement(1138161..1171433)
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AA seq
448 aa
AA seq
DB search
MLPSSQAGVVGSGRGLGLARRAGNGAGCPGVRGPGVQYSGSSGSSDSGEEEDPPGRGLKR
GLNELELPEQGGAAGGVGYPGASGTVSGAKPGKKTRGRVKIKMEFIDNKLRRYTTFSKRK
TGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSETGKALIQTCLNSPDSP
PRSDPSTDQRMSATGFEETDLTYQVSESDSSGETKDSLKPAFTVTNLPGTSNIQTVPTTS
TSMQVSSGHSFPITNYLAPVTSANGTVLKTEGGAMSSGGLMQIPTGFTLMSAGGAVAQQV
PVQAIQVHSAAQASPSSDSSSELVQTSSSGTVTLPAAIMTSSVPTTVSGHMMYPSPHAVM
YAPTQGLTDGGLAVLNAFSSAPPMQVSHTQEQGGVQQVFLTAPPGTVQIPVSAVQLHQMT
VIGQQSSSSNLTELQVVNLDTSNSSKND
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atgttgcccagtagccaggccggggtggtggggtcaggccgggggctggggttggcccgc
agggcaggcaatggggctggttgcccaggggttaggggccccggggtccaatacagcggc
agctctgggagctcagactcgggggaagaggaggatcctcctgggcgggggttaaagcgg
gggctcaacgagcttgagctgccggaacaagggggtgcagccggcggtgtggggtacccg
ggggccagtggcacggtgtcaggggcaaaacctggcaagaaaacccgcggccgagtgaag
attaagatggaattcatcgataacaaactgcggcgctacacgaccttcagcaagcgcaaa
actggcatcatgaagaaggcctatgagctttccaccctgactggcacccaggtgctgctg
ttggtagccagtgagaccggccacgtgtacacgtttgccacgcgcaagttgcagcccatg
atcaccagtgagacggggaaggcgctgatccaaacctgcctgaattcgccggactctccc
ccccgctcggacccctccactgaccagcgcatgagtgccaccggcttcgaggagactgac
ctcacttaccaggtgtctgagtctgacagcagtggggagaccaaggactcactaaagccg
gcattcaccgtgaccaaccttccaggcacgtccaacatccaaacagtgcccaccacctcc
acttccatgcaggtcagcagcgggcactcatttcccatcacaaactacctggcaccagtt
accagcgccaatgggacagtgctgaaaacagagggcggcgctatgagctcagggggatta
atgcagattcccaccggcttcactctcatgtcagcagggggagctgtagctcagcaggta
cctgtccaggctattcaggtccattctgcagcacaggcatcgccatccagtgacagcagc
tcagagctggtgcagacctcctctagcggaacagtgacactgcctgcagccatcatgacc
tcctcggtgcccacaacagtgagtggtcacatgatgtaccccagtccccacgcagtcatg
tatgcccctactcaaggactaaccgacgggggcctcgctgtgctcaatgccttctcctcc
gcaccccccatgcaagtctcgcacacccaggaacaagggggcgtccagcaagttttcctc
accgctccccccggcactgtccagattcctgtgtctgcagtacagctccaccagatgacg
gttattgggcagcagtccagcagcagtaacctgaccgagctgcaagtggttaatctggac
acgtcgaacagcagcaagaacgactga
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