Xenopus tropicalis (tropical clawed frog): 100497590
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Entry
100497590 CDS
T01011
Symbol
scarf1
Name
(RefSeq) scavenger receptor class F member 1
KO
K24318
scavenger receptor class F member 1
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
100497590 (scarf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xtr04131
]
100497590 (scarf1)
Membrane trafficking [BR:
xtr04131
]
Endocytosis
Phagocytosis
Scavenger receptors
100497590 (scarf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
EGF_TEN
EGF_2
EGF_PEAR1L
Motif
Other DBs
NCBI-GeneID:
100497590
NCBI-ProteinID:
XP_002936099
Xenbase:
XB-GENE-953542
UniProt:
F6YYE2
LinkDB
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Position
2:45657896..45693995
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AA seq
890 aa
AA seq
DB search
MGMPGRTQRVQVIICLWSWLQAMCSMQDLDPKGVNVCISESVTKELVCCPGWKQEGRACT
VAICEGEDTCKTDEVCIRPGVCRCKPGYFGASCNSRCPDQYWGSDCKQSCSCFPNGKCDP
VSGQCTCYSNRWGPNCQHPCHCSQHGACNPLTGVCHCENGWWTPYCNKQCHCNLQTSRCS
QATGQCICDTGWWGQKCSVKCNCNNSPCLQINGRCKCQEGWWGVSCEYQCDCLHGKCSPL
NGKCDCHVGYQGASCADPCTPGTYGTNCKNRCGHCKQGQICSPVDGLCLSCDPGWNGTHC
DQPCPSGYHGENCGQRCPKCRGTEECNRETGTCEHCDAGKLGPRCDSKCPPGSYGERCQY
LCPVCIYGTCDPKTGECICDAGFWKQSCNETCPRGYYGLNCSSTCDCNGGPCSPIYGTCQ
WTSSQKGALVAGVLVSVLFFLFILCCCCCCGTDQSDSKNRVSQEGGTFSRMKHNFQGTLA
NISSLLPCCSVGSTKLSWVTVSHHDAELPFNHSFIESPSTGWLSENSFSSFESDEGGPVY
CVPPREGMSIADLDGFQEISSKCNVFPDSLAFNRDDVSQPFSIPRTSSIAKAKRPSVSFA
EGTKFGSRRSSATETPNLVRKPKLALSLPKLPSIHSQSINREDLTHSEQANDFYEKVCIN
QGPEDHPKVHRNVPVGRRRTMSNAQKVALKSEVVESSVIENVYDTKRKSTGVTTVYVSVG
PPKKVYKPRRRSEGNIDGAVQAVLKRLGSFQKGIPKPARKNLHQTSNAKIPQSKISEEES
FPTDSTNSNSPSAKFQDNQARKVLMPTSSILKKIPSRAEEGTEYVHSSDKLENMYSSLAE
PIALLEQAKYTEHIYHTTENTDSEPKYENISVTKCNKTNDIEASSLYEDA
NT seq
2673 nt
NT seq
+upstream
nt +downstream
nt
atggggatgccagggagaacacagagagtgcaggtcattatttgcctttggagttggctt
caagcaatgtgctctatgcaggatctggatcccaagggggtgaatgtttgtatatcagaa
agtgtcaccaaggagcttgtgtgctgcccaggatggaaacaggaagggcgagcatgtaca
gttgcaatctgtgaaggagaagatacctgtaaaacagatgaagtatgtattaggcctgga
gtctgccgctgcaaacctgggtactttggagccagttgtaactcacgttgccctgaccag
tattggggatcagactgcaagcaaagctgctcctgttttcctaatgggaagtgtgaccct
gtaagtgggcaatgtacctgctattcaaatcgatggggacctaactgccagcatccctgc
cactgctcccaacatggagcctgtaaccctctcactggtgtatgtcactgtgagaatgga
tggtggaccccctattgcaacaagcagtgccactgcaacctgcagacatctcgctgcagc
caagctactggccagtgtatttgtgacacaggatggtggggtcagaaatgcagtgtgaaa
tgcaattgcaacaactcaccctgccttcagatcaatgggagatgcaaatgtcaagaaggc
tggtggggagtttcctgtgagtaccagtgtgactgtctgcatggcaaatgcagccccctg
aatggaaagtgtgactgtcatgtgggatatcaaggagcaagctgtgcagatccttgcact
cccggcacatatggaaccaactgtaaaaacagatgtgggcactgcaaacagggacagatt
tgctccccggtggatggcctttgtctgtcctgtgacccaggctggaatgggacccattgt
gaccagccatgtccatcaggatatcatggagaaaactgtggacaaagatgcccaaaatgc
cgcggaacggaggaatgcaatagggagactgggacatgcgaacattgtgatgctgggaaa
ctggggcctagatgtgattcgaaatgcccaccgggaagctatggggaaagatgccagtat
ctgtgtcctgtctgtatttatggaacctgtgaccccaaaactggagagtgtatctgtgat
gccggattttggaaacaaagttgcaacgagacatgccctcgtggctattatggattaaac
tgctcaagcacctgcgattgcaatgggggcccctgcagcccaatatatggaacatgccaa
tggacatccagtcaaaaaggagctctcgttgctggtgtccttgtgtctgtgttgttcttc
cttttcattttgtgctgttgctgctgttgtggaactgaccagtctgattcaaaaaatagg
gtatcccaagaaggaggaaccttttcaagaatgaagcataattttcaagggaccttggca
aacataagttcactgttgccctgttgttctgttgggagtactaaactctcctgggtaact
gtttctcaccatgatgcagagcttcccttcaatcatagtttcattgagtccccttccact
ggctggttgtctgagaactccttctcttcatttgaatcagatgaaggtggtccagtctac
tgtgttcctccaagagaaggaatgtccatagctgatcttgatggatttcaggagataagt
tctaaatgcaacgtttttccagattctttggctttcaacagagatgatgtctcccagcca
ttttctatccccaggacatctagcatcgccaaagccaaacgaccttcggtgtcatttgct
gaggggactaaatttgggagtagaaggtcatcagccactgagacacccaatcttgttcgc
aaaccaaaacttgctttgagccttccaaaactgccttccattcactcacagtctataaat
agagaagatctcactcacagtgagcaagccaatgatttctatgaaaaggtttgcattaac
caggggccagaagatcatcctaaagtgcatagaaatgtgcctgtaggacgcaggaggact
atgtctaatgctcagaaggtagcactgaaatctgaagtagtagaatctagtgtaatagaa
aatgtttacgatacaaaacgtaaaagcactggtgttactactgtttatgtgagtgttgga
cctccaaaaaaggtttacaaacctcggagaagatcagaaggtaatattgatggagctgtg
caggctgtattaaaacgtttgggcagctttcagaaaggtattccaaaacctgctagaaaa
aatttgcatcagacatcaaatgctaaaattccacaatcgaagatatctgaggaagaaagt
ttcccaacagacagcacaaactctaactctccaagtgctaaatttcaggacaatcaagca
aggaaagtgcttatgccaacatcttctatacttaagaaaattccgtccagagctgaggag
gggacagaatatgtgcacagttctgataagcttgagaatatgtattccagcttggctgaa
cccattgcactactggaacaagctaaatacacagagcatatttatcatactacagagaat
acagactcagaaccaaagtatgaaaatatatcagttacaaaatgcaataagactaatgat
atagaggcatctagtctatatgaagacgcttaa
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