Xenopus tropicalis (tropical clawed frog): 100497591
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Entry
100497591 CDS
T01011
Symbol
cdrt1
Name
(RefSeq) CMT1A duplicated region transcript 1 protein
KO
K10266
F-box and WD-40 domain protein 10
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
xtr04121
]
100497591 (cdrt1)
Ubiquitin system [BR:
xtr04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
100497591 (cdrt1)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
EIF3I
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_C
Beta-prop_SCAP
Beta-prop_EML_2
Beta-prop_EML
ANAPC4_WD40
Beta-prop_CAF1B_HIR1
Beta-prop_Vps41
Beta-prop_DCAF4
Beta-prop_WDR90_POC16_2nd
Beta-prop_IP5PC_F
F-box
F-box-like
NBCH_WD40
Beta-prop_HPS5
VPS8_N
Beta-prop_IFT140_1st
Motif
Other DBs
NCBI-GeneID:
100497591
NCBI-ProteinID:
XP_002937067
UniProt:
A0A6I8SWC6
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All DBs
Position
10:complement(49220367..49233479)
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AA seq
1065 aa
AA seq
DB search
MKQHRIMGMMEVCEYRLLSSPVLRCAKVPMCQRCETCLLSRRHAQTKEWLGRASDASHRR
FLFGVIRRLQSLELLQYLEKVLRPTLGKDFTYSRSRINPSLRQDLGTSGSDRALNRRLLL
QFMLETWEWLKHAPYWSKANYTLLLLQMCPPNLVHSAANLIHVLIMQEMHPHTRKAVTPM
GHSRATGQDGTQGPDQAVSSDDPSIMMVPTSFKSTSGVSLYKDFICCLPVHLSKRILGFL
NKKSLFSCLFVSQYWYYLIKETLQDLDAERLVRNEAMILQGTSYKGVSISYAKIRSVPVP
KVGEGGNTINAVERKFYQETKTGESLEAAYIDTETTSVPLEERNLFCGSYNVLILTGQGD
HHRVIHFDGGRLVAVGSVDRKVKLFDLVEMKQVPPLIHGHAGSIRRVFLCEERGFLFSGG
FDLSIRQWAVESGVCMRIFHGHMKTITSLDVEEDLLVSGAKDCHVKVWNIPTGKCLRTFK
HKDPVLCVRIKERYVVSGCEKGLVKLWHMDSATLIKTLTGHSGPIKCLSFDQWHLISGSA
DGYAIAWSMMGNFQKRLCTFRHPKEVLCMEFLYLRVITGCADGKIRVFNFLNGDCLRVMR
ANSRADPVMSLCIRDNRMVINTPASIMIFQFEEVSWDYSQASERVDVLKERDKFKSAPLR
VRPYSYVRAQRMKRVGSSNVKMYQQQEEEVNREGTSRLSHHARSLSAKSMKRAQDLHQES
LKPVTWPELRNFRRSFAYIDLQPEFYKKSPSASWPRTAPRGSPEPISRESTATELKARDD
SDAESGYGSPGRKSALSVSESATLERIRKRGPHSAMNPDQILLKVGAMNYTQRSDQLAWN
GEYNAMVRDAWGPQMSPQEPQKRFSDSQLKERRKDNAVTRLERIESSAEIKTTVTPFELR
KLSLKLKESLHGSETPSSIPPPVLLRAQTSLNRKKRVALPRRTASAVESGVKQIGKYTSC
ESIQPVKMVMGQRERPPQRKRAPERAVTVNPYREKSGFQLLTVQQMKEYEAEKVAQYQTA
EAHVQANRDQESRKAWLRKIKGKNIDHFTKEGKIAAPELGPNVFL
NT seq
3198 nt
NT seq
+upstream
nt +downstream
nt
atgaaacagcacaggatcatgggaatgatggaagtgtgtgagtacaggctgctcagtagc
ccggtcctacgctgtgccaaggtgccaatgtgccagcgctgtgagacttgcctgctgagt
aggagacatgcccagaccaaggaatggctagggagagccagcgacgcctcccacaggaga
ttcctctttggggtaattaggaggctgcagagcctggaactgctgcaatacctagagaag
gtgctgcggccaacattgggcaaggacttcacctacagccgctcccgtataaaccccagc
ctcaggcaggacctgggcacctccggctccgacagggcgctaaacaggcgacttctgctg
caatttatgctggagacttgggaatggctcaagcacgccccctactggagcaaagcaaat
tacacactgctgctgctacaaatgtgccccccaaatctagtgcacagtgctgccaatctg
atccacgtgctcatcatgcaggagatgcacccccatactaggaaggcagtgacgcctatg
ggccactctagggcaacggggcaagatggaacgcaaggaccggatcaagctgtatcctca
gatgacccctccatcatgatggtgccgacgtcatttaagtcaacatcgggagtcagtttg
tacaaagacttcatctgctgcctgcctgtccatctgtccaagcgcatcctcgggttccta
aataagaagtccctattcagttgcctgtttgtatcccagtactggtactatctaattaaa
gaaaccctgcaggatctagatgctgaacgattagtgcggaatgaagccatgatcctacag
ggtacgtcctacaaaggtgtgagtatctcctatgccaaaattcgaagtgttccagtccca
aaagttggtgagggtggaaataccattaatgccgtggagaggaagttctaccaggaaaca
aagaccggagagagcctagaagcagcttatattgatactgagacaacctcggtccccttg
gaagagagaaaccttttctgtggctcatacaatgttctcatactaacgggacaaggagat
caccacagagtgatccactttgatggagggcggctcgttgccgttggctcagtcgaccgc
aaggtgaagctgttcgacctggtggagatgaagcaagtgcccccactgattcatgggcat
gctgggagcatccggcgagtcttcctctgtgaggagagaggatttctgttcagcgggggg
tttgacttaagcatcaggcagtgggccgtggagtcgggggtgtgtatgagaatctttcat
ggccacatgaagaccatcaccagtctggatgtagaagaagatctgttggtttctggtgct
aaagactgccatgttaaagtgtggaatatacctacaggcaagtgcctgcgcacctttaag
cacaaggatcccgttctgtgtgtgagaataaaggagcgctacgtggtgagcggctgtgag
aaaggcctcgtcaaactgtggcatatggactccgctacactcatcaagactctgacaggt
cacagtggcccaataaaatgcctttccttcgaccaatggcatctgatatccggaagtgct
gatggctacgctatcgcctggagcatgatgggaaactttcaaaaacgtctttgcactttc
aggcacccaaaggaggtgctgtgcatggaattcctctacctcagagtcatcacagggtgc
gctgacggcaaaatccgggtgtttaatttcctgaatggagattgtctaagagtaatgagg
gccaatagccgagcggatccggtgatgtcattatgtataagagataacagaatggtcatc
aatacgccagccagtatcatgattttccagtttgaagaggtttcgtgggattactcgcag
gcatctgagcgagtcgatgttctgaaagaaagagacaagtttaagtcggctcctctcagg
gtccggccgtacagctacgtgcgggcacagaggatgaagcgggtgggatcaagcaatgta
aagatgtaccaacagcaggaagaagaagtaaatagggagggcaccagtaggctgtcccac
catgccaggagcctgtcagcaaagagtatgaagagagcccaagatctgcaccaggaatct
ctgaagccggtaacttggcccgaactgaggaatttccgcagaagctttgcctacattgat
ctgcagcctgagttctataagaagtctccttcagccagctggccccgtacggcccccaga
ggcagcccagagccaatcagcagggaaagcacagcaaccgagctgaaagcaagggatgat
tcagatgctgaatctggatatggttcccctgggcgcaagtccgccctctccgtaagtgag
agcgcaactctggagcgcataagaaaacgcggacctcactctgcgatgaaccccgaccaa
atacttcttaaagtcggcgccatgaactacacgcagaggtcggaccaacttgcatggaat
ggcgaatacaatgcaatggtaagggacgcttggggtcctcaaatgtccccccaggagccc
cagaaaagattctccgactcccaactaaaggaaaggcggaaagacaatgcagtcacgcgt
ttggagcggatagaatcttctgcagagataaaaaccacagtcactccgtttgagctgaga
aagctgagcctcaagctgaaggagtcccttcatggctcggagaccccgtcgtctattccg
cctcccgttttactacgtgcacaaaccagtttgaataggaagaaacgcgtcgcgctcccc
cggaggacagcttccgccgtggaaagcggagtaaagcagatcggaaagtacacaagctgc
gagtccatacagccggtgaaaatggtgatgggccaacgtgagagaccgccccagaggaag
agagctcccgagagagccgtgactgttaatccctacagagagaagagtggcttccagctc
ctcacagtgcagcagatgaaggaatacgaggctgagaaggtggctcagtaccagacggcg
gaggcccacgtacaggccaatagggaccaggagagcaggaaagcgtggctcaggaaaatc
aaagggaaaaatattgatcattttaccaaagaaggaaaaattgcagctccggagcttgga
cccaatgtttttctttga
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integrated database retrieval system
