Xenopus tropicalis (tropical clawed frog): 100498152
Help
Entry
100498152 CDS
T01011
Symbol
tnrc6b
Name
(RefSeq) trinucleotide repeat-containing gene 6B protein isoform X4
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xtr03019
]
100498152 (tnrc6b)
03036 Chromosome and associated proteins [BR:
xtr03036
]
100498152 (tnrc6b)
Messenger RNA biogenesis [BR:
xtr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100498152 (tnrc6b)
Chromosome and associated proteins [BR:
xtr03036
]
Eukaryotic type
Gene silencing
piRNA pathway
100498152 (tnrc6b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
Ago_hook
M_domain
RRM_occluded
RRM_1
Motif
Other DBs
NCBI-GeneID:
100498152
NCBI-ProteinID:
XP_002934255
Xenbase:
XB-GENE-951772
UniProt:
A0A6I8RZZ6
LinkDB
All DBs
Position
4:121657102..121742437
Genome browser
AA seq
1867 aa
AA seq
DB search
MREKHLKKAVPREKEQEREEQLMEDKKRKKEDKKKKEAAQKVTEQKTKVPEVTKPSSSQA
TAASLPGSSPSPPVNGGNNAKRVAVPNGQPPSTARYMPREVPPRFRCQQDHKVLLKRGQP
PPASCMLPGGGAGTPPSTTAPGAGPGNAQPGAGTLLPGESGASTDSSSGAAATSNYANST
WGSGGPTSSGPTTNPPHAWDKVIVDGSDMEEWPCIAGVDAEPPSDNATDNNSASNSASEK
GPPQGSTTSHKGRGGQGQQQQQQQPGSECIQGVWKSDPKAKPVPSSNPASEGVNRLGNWR
NGGGSERAGSASGFSNFNPNTNPSAWPALVQEGNRKGNPESDSSFSGAQLGPVGLTSREQ
QSKMENAGSSFAGSGRESATTHHTDGPKNGNTNSTNSNTLNPPDNKGTAFGVGSMDSCRG
SDSPAQSTGERKNGGIGSWGAGRGQSATGDANCGHSNSGSNGREREDARKAPSSHRPNGS
RGESWESKSGNGSWGYSPQADLSEVKWSEGNKLGAGGASQGEWKQPAGHEDLKVGEWGGL
NQGNSSTGAWDNQKGHSLSDNQGNTSSAACWGRAPSSAGSEAGGQSTGSNAKAGGSGGSG
DSLNSSSRRSHRPALPDSQAALQTLLNRTDLDPRVLSNSGWGQTQIKQDASWESEEVPSR
TEGKSDRGTEGWENVSQAKTSGGWGDAPSQSNQNKSGWGEPPVPAPSTQEWKDTKATGWN
DYKNSPTGWVGGGGGGVVGARPEDKAVPGWNNESGGAAEPGWSTRQSNPGGGWSAGKNGW
GGNGSEDMEPPKAPGGWEGSGSKSSSGWGEVGQNDVGSWGNGANSNPAPRTGWEETKRPQ
GGGNWGEAARPQLPWNKQQESTPSSATPSTWGGSQAPPPPGNGRSQPTSGWKGGPQPTVS
KEEEPSGWEEPSSQSIGHKMDIDDGTAAWGDPNNYNYKNVSLWDKNAQAGPGQMAREQGI
SGTLANKAAPSVWSKNKGPPTDNGTSAWGEPTEPASGWGEGEESGPPTPGWGSAPQVNPS
AMKSGTKSMQDGWGESDGPVTGTRHSSWDEEEEGGVWNSAGSQGSGSSHNSAGWGQGGKK
PQIKGPLKGGSNDTWMNTLPKQFSNMGLLSQVDDPSTTKMDHPGGLPDKKFETDKRGVNL
GDFNDMMRKERSGFRLNNSKEMGAADSGPYFEKLTLPFSNQDGCLGDEAPCSPFSPSPSY
KLSPSGSSLPSVGLGAIGSGLNPQTFAARQGGNHGLFGNSGAQSRGMHNPVPSLNSSPNL
RAQVPPQFLSPQVSASMLKQFPNSNMNPGLFNMGPQLSPQQIAMLSQLPQIQQFQLACQL
LLQQQQQQQQQQQQQQLLQNQRKISQAVRQQQEQQQIARMVSALQQQQQQQQQQQQRQPG
MKHSPSHPAGPKGHLDAVGLSDMQAKGHMPYGSGFGSSGMDYGTVGKEAGAESRFKQWTS
MMEGLPSTVSQDTSLHKNGSIAPPVKNRGGSPYHQYDMLSTDALGGHGGPTAESWLPAKS
PPSSKIGNKSINASWPPEFQPGVPWKGIQNIDPESDPYVTPGSVLGGPAPSPIVDTDHQL
LQDTPTGSNSSLNTSLPSPGAWPFSASENIHSTSALSAKFGDYKSTWSPDPIGHNPSHHS
NKMWKNQMSRNSPGLPRPPPGLTNNPKATNSPWNSTAPRSVRGWGGQDSRMASASAWSDG
GSVRPSYWLILLNLTPQIDGSTLRTICMQHGPLLTFHLNLTQGTALIRYSTKQEAAKAQS
ALHMCVLGNTTILAEFATDEEVSRYLAQAQPPAPSAPGAGWQPLEVGPNHPAEPVGPALN
LFGGTTGLGQWSSGGGGSDLSGVSLWGTPSSYTSSLWGVPSTEDAHRMGSPAPLLPGDLL
GGGTDSI
NT seq
5604 nt
NT seq
+upstream
nt +downstream
nt
atgagggagaaacacttgaagaaagctgttcccagagagaaggagcaagaaagggaagaa
cagttaatggaagacaagaaaaggaagaaagaggataaaaagaagaaagaagctgctcag
aaggtcacagaacaaaaaaccaaagtgcccgaagtgacgaaaccaagttcaagccaagcg
acggccgccagcctacctggcagctccccctcgccaccagtcaatggtggcaacaatgcc
aaaagggtggcagtgccgaacggacaaccgcccagcaccgcccgctatatgcctcgggag
gtgccgccgcgattccgctgccagcaggaccacaaagtgttactgaagcgtggacagcct
cctccagcgtcctgtatgctgccggggggaggagcagggactcccccctcaaccactgct
ccaggggccggcccaggcaacgcacagccaggggcggggacactgctgccaggggaaagc
ggggcttcaacagactcatcatcgggggcagctgctacttcaaattatgcaaattccact
tggggctcaggaggccccaccagcagcggccccaccacaaaccctccccacgcctgggac
aaagtgattgtagacgggtcggacatggaagagtggccttgcatagccggcgtggacgca
gagcccccttccgacaacgccacagacaacaacagtgcctcgaactcagcctcggagaag
ggacccccacaaggaagcaccactagccacaaagggcgagggggccagggccagcagcaa
cagcagcagcagcctggtagtgaatgtatccagggcgtctggaaatctgaccccaaggct
aagcccgtcccgtcttccaaccctgcttcagagggtgtaaatagactgggaaactggaga
aatgggggtgggtcagagagagcaggttctgcctctggtttcagcaactttaatccaaat
actaacccatctgcttggcctgcccttgtccaggaaggcaacaggaaagggaacccagag
tcagacagcagcttttctggcgcacaactcggcccagtgggtttgacctctcgggagcag
cagtcaaagatggaaaatgcaggttccagctttgcaggatcgggcagggagtctgccaca
acccatcacactgacggaccaaaaaatggaaacactaactctacgaactcaaatactttg
aaccctcctgataacaagggaacagcttttggggtgggctcaatggattcctgccggggt
tcagactcccctgctcaaagcactggagaaagaaagaatggggggattggctcttgggga
gcgggaaggggtcagtctgccacaggagatgctaattgtggacatagcaactctgggagc
aatggacgagagagagaagacgcaaggaaagcgccttcatctcatagacccaatgggtca
aggggggaatcttgggaaagcaaaagtgggaatggttcttggggttacagcccgcaggca
gacctcagtgaagtgaaatggagtgaagggaacaaattgggggctggaggggcgtctcag
ggagaatggaagcagccagccgggcatgaggacttaaaggtgggagagtggggaggcttg
aaccaaggaaactctagcactggagcatgggacaatcagaagggccactctctatcggat
aaccagggcaacacgtcatcagcagcctgctggggccgagcccccagctctgcaggaagt
gaagctggggggcaaagcactggaagcaacgctaaagcaggggggagcggaggaagcgga
gacagcctgaactccagcagtcgacgttcacacagacctgccctcccagacagtcaggct
gctcttcagactttactgaatcgcactgatttggatccccgggtgctgtccaactctggc
tggggccaaacccagatcaagcaagatgcatcatgggagagtgaggaagtgccctctcga
actgaaggcaaatcagaccgtgggactgaaggttgggagaacgtgtcccaagccaaaacc
tcagggggttggggggatgctcccagccaaagcaatcaaaacaagtcaggctggggggag
ccccctgtccctgcaccttcaacccaagaatggaaggacaccaaagcaactggctggaat
gactataaaaacagcccaactggttgggttggtggaggaggtggtggggtggttggagca
cgaccagaggacaaggcagttccaggttggaacaatgaaagtggtggggctgcggagcct
gggtggagtactcgccagtctaatccaggaggtggctggtcagcaggaaagaatggttgg
gggggaaatggtagtgaggacatggagcctcccaaggcccctggaggctgggaaggctca
ggaagcaaatcctcctctggctggggtgaagttggacaaaatgatgtgggttcttggggt
aatggggcaaactcaaatccagctccacgaactggctgggaggagactaagaggccccag
ggaggaggaaactggggtgaggcagctaggccccaactaccctggaacaaacagcaggaa
tcaacgccatcttcagcaactcctagcacctgggggggctctcaggctcccccgccacct
ggaaatgggaggtcacagccaacttcagggtggaagggtggtccccagccaactgtttcc
aaggaggaagagccaagtggctgggaggaaccatcctcacaatccattggtcataaaatg
gacattgatgacggaacagcagcttggggggatcctaacaattacaattacaaaaatgtc
agcctgtgggacaagaatgctcaagcaggccctgggcagatggctcgggagcaaggaata
tctgggacattggcaaacaaggcagctccctcagtgtggagtaaaaacaaaggaccccca
actgacaatgggacatcagcttggggtgagccaactgaacctgcttcagggtggggagaa
ggtgaggagtcgggtccaccaacaccaggatggggaagtgcaccccaagtaaatcccagt
gccatgaaatctggtacaaaatctatgcaagatggctggggtgagagtgatgggccggtg
acaggaacacgtcacagcagctgggatgaagaagaagagggtggagtctggaacagtgca
ggttctcagggaagtggctcctcccacaactctgcaggttggggacaaggaggaaagaaa
ccacagatcaagggtcccttaaaaggagggagcaatgatacctggatgaacaccttgccc
aaacagttctccaacatgggattgttgagccaagttgatgatccctctaccactaagatg
gaccatcctggcgggcttccagataagaagtttgagacagacaagcggggcgtgaatctc
ggggattttaatgacatgatgcggaaggaacggtctggcttccgtctgaacaattccaaa
gagatgggagctgcagacagtgggccttattttgagaagctgactttgcctttctccaat
caagacgggtgccttggggatgaggctccctgttcccctttttctccctcccctagctac
aagctatctccctccggctcctcgctcccttccgtgggcctgggggctatcggttctggc
ctcaacccccaaaccttcgctgctagacaaggtggcaatcacggactatttggaaacagc
ggtgcacaatcgcgaggcatgcacaaccctgtgccatcgctcaactcctctcccaacctc
cgggcacaagtgcctccccagttcctctctccccaggtctcagcctccatgctaaagcag
tttcctaacagtaacatgaatccaggacttttcaatatggggccacagctttcccctcag
cagattgcaatgctgagccagcttcctcaaattcagcagttccagctggcatgtcagctc
ctcttgcaacaacaacaacagcagcaacagcagcagcagcagcagcaactccttcagaac
cagaggaagatctcacaagcggtcagacagcagcaggaacagcagcagatagcacgcatg
gtaagtgccctacaacagcagcaacagcaacagcagcagcagcaacagaggcagccagga
atgaagcactctccctctcaccctgctggacccaaaggtcacttagatgctgttggactc
tcagacatgcaagccaaagggcacatgccatatggatctggttttggctcaagtgggatg
gattatggtacagtaggtaaggaggcgggagcagagtctcgatttaaacagtggacatcc
atgatggaggggctaccgtccactgtttctcaagataccagcctgcataaaaatggctcc
attgcacccccagtaaaaaatcgtggaggttccccctaccaccaatatgacatgttgtct
acggatgctttgggagggcatggggggccaacagctgagagctggttacctgccaaatca
cccccttcaagcaaaattggaaacaagtcaatcaatgccagctggcccccagagtttcag
ccaggagtgccatggaaagggatccaaaatattgatccagaatctgatccttatgttacc
cctggcagtgtgcttgggggtccagccccatctcccattgtagatactgaccaccagcta
ctgcaggacacccccacagggtccaattcttccctcaacacctcgctgccttcacctggt
gcctggccctttagtgcctctgagaatatccatagcacttcagcactctctgcaaagttt
ggggactacaaatcgacctggtcaccagaccccataggacataacccatcacatcactca
aacaagatgtggaaaaaccagatgtccaggaacagccctgggctgcctcgcccacctcca
gggctcacaaacaaccccaaagccaccaactctccctggaacagcacagcacctcgctcc
gtcaggggctggggcggacaggactccagaatggcttctgcatcagcttggagtgatggt
ggatctgtgcgccccagctactggctgatccttcttaatctcacaccacagatcgatggt
tccaccctgcgaacgatctgcatgcagcatggccccctgctgacattccatctcaacctt
acccagggcacagctctaatccgatacagcaccaaacaggaggcagccaaggcccagagt
gccctccatatgtgtgttctgggtaatacaactatcctggcggagtttgcaacggatgag
gaggtgagccggtatcttgcacaagctcagccaccagctccctctgctccaggagcaggc
tggcagcctttggaagtgggaccgaaccacccagctgaaccagtagggccagccctaaac
ctttttggaggaaccacagggctagggcaatggagcagcggcggtggtggtagtgacctg
tcaggggtttctctctggggtactcctagcagctacacatccagtctgtggggtgtaccg
agcacagaggacgcccacaggatgggcagccctgccccgttactacccggtgaccttctg
ggaggagggaccgactcgatataa
DBGET
integrated database retrieval system
