Xenopus tropicalis (tropical clawed frog): 100498254
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Entry
100498254 CDS
T01011
Symbol
chd6
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 6 isoform X2
KO
K14436
chromodomain-helicase-DNA-binding protein 6 [EC:5.6.2.-]
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
xtr03036
]
100498254 (chd6)
Chromosome and associated proteins [BR:
xtr03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
100498254 (chd6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
Helicase_C
Chromo
ResIII
HTH_Hrp3
DEAD
CHDCT2
HDA2-3
MUN
Chromo_MIT1
Motif
Other DBs
NCBI-GeneID:
100498254
NCBI-ProteinID:
XP_002932929
Xenbase:
XB-GENE-5964535
UniProt:
A0A6I8RUE2
LinkDB
All DBs
Position
10:42270803..42350080
Genome browser
AA seq
2665 aa
AA seq
DB search
MIMKIQKPDQQLPSLKALSYSPMSSASIPCEHPILPSFSESTPQDFHSVTLLDTTSHLLD
DNVLYPDSGQEECLAVEATSINGMENSGGGGTGVKKKRKKKEPGEEKVAKPKKKKEPKKV
KEPKKVKEPSEAKDPKEQKQPKSPKEPKKPRKPREPKPPKQKKANQDSAAKTKPKKLSKE
QGPTPLEKKKKGKRKAEFSEESLDGEPSLLNPASQSTEESTESLDSQKRRSGRQVKRRKY
NEDLDFKVVDDDGETIAVLGAGRASALSASTLAWQAEEPPEDDANIIERILSSRISQKEF
MHAGIPLEVEEFYVKYRNFSYLHCKWATLEELEKDPRIQQKIKRFRNKQAQMKHIFTEPD
EDMFNPDYVEVDRVLEVAHTKDSDTGEEVTHFLVKWCSLPYEESTWELEEDVDPVKVKEF
EALQKVPDLTPMERPASETWQKLVSSRTYKNNNQLREYQLEGMNWLLFNWYNRKNCILAD
EMGLGKTIQSITFLSEIFFMGIRGPFLIIAPLSTITNWEREFRTWTEMNTIVYHGSQISR
QMIHQYEMYYRDEQGTPIPGIYKFQIVITTFEMILADCPELKKIRWSCVIIDEAHRLKNR
NCKLLEGLKLMALEHKVLLTGTPLQNSVEELYSLLNFLEPVQFPSESTFLEEFGDLKTEE
QVKKLQSILKPMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFTFLTKGA
NQHNMPNLINTMMELRKCCNHPYLINGAEEKILEDFRKRHSPDALDFQLQAMIQAAGKLV
LIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYIYERIDGRVRGNLRQAAIDRFC
KPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYR
LITRNSYEREMFDKASLKLGLDKAVLQDINRKGNTNGVQPLSKIEVEDLLRKGAYGALMD
EEDEGSKFCEEDIDQILQRRTQTITIQSEGKGSTFAKASFVSSGNRTDISLDDPNFWQKW
AKIAELDTDARNEKESLVLDRPRVRKQTKHYNSFEDDELMEFSELESDTEERPTRSRRLN
DKTRRYLRAECFRVEKNLLIFGWGRWKDILNLGRFKWHLNEKDMEMICRALLVYCVKHYK
GDEKIKSFIWDLITPTKDGHNQALQNHSGLSAPVPRGRKGKKLKNQMLLPEIKNADWLAS
CNPEIVLHDDSYKKHLKQHCNKVLLRVRMLYYLKAEVLGEAASRALEGENARDLEVLLPD
IDYVEIPVDWWDTEADKSLLLGVYKHGYERYFAMRADPALCFLDKVGMPDETSLTADGVN
DVAPELGDGSAIKEENNEEKVNEQQEDASESTGKEEKADEESSIVENIQAQDSPEADKLS
WPVASALTARLRRLITVYQRCNRRDLARPEVLVPTNHSYWLQEEMARRAEMDPIMKEMQK
RWTRREQADFYRTVSSFGVIYDPEKKCFDWTQFRALSRLDKKTDESLEKYFHSFVAMCRN
VCRLPLRKDDGSADPSLFLDPITEERAARTLYRIELLRKVREQVLRHPQLHDRLKLCRPS
LYLPVWWECGKHDRDLLIGTAKHGLSRTDYYIMNDPQLSFLDAYRNYAQNKRNSGENMCY
HFQMNSKVQETPSCHLERTCESTKLKPEKDIKTEVEEATTSNQMCSPPDLTCENFISQVG
DMISNNHDECSMSDSLMCMICDEKTCNSALLDASNSEQSSLTQESFLGLEAKNGPTDYSL
NKAKEDNILPVEESVSRDCFLGSSEKDEPMEGIDRINEPFGDSGSHLGLAAEDCEKAQVD
AIGQRDLDDDNFCTSLSQTAEQSLGLDLEFLDKTFGDHSALSPGINEDKDCGITGEHSEG
PHLNPMPVQEKEEWGADLQELKEDPIVKWQNELNDMKDPPLEDVIKDHKLEDLSIEKDSS
TSKGSYGIPSLQVNECLDMKHKTSLMLSGLLKQKVEDLKERIAGENVLEESNVPLEENET
IKLEECEVKKEVKKESVEEECNCKDYLDKYTEDDVKACPLSVPEESHQDFQDGRAPTIAQ
LLQEKTLYSFSEWPKDRVIINRIDNICHAVLKGKWPSSSQQFEAQCMVPSSVLSTCTRSS
SYPAEAQSIAYSNGSPVPQAQKEPLSAATFPNEERKHRRPFEFDSERQDGKLRGLEHLSP
SHGRTNSALNGWRDAAIELCREQAAGGGSSYPMNTSTPKIAGIGGLQSSLGMDLSGILQA
GLIHPVTGQIVNGSLRRDESSLRRRRGRRKNVEGMDLGFLKDRGMHAGILGLREVPNQLG
SGHTESSLSASARSGVPGAKFQPEKVISNKSLLEWLRQQSDCTIDIPTYGGSFSDKPKPR
RQRCKEPSKPEFSLLAGDDRVSLVNKDTGQQGFLPESKFGRALPEPLMHETMPRRRGRRP
RSELLKSTGTMGSDSSSGMGPLFMNGLIAGMDIVGLQNMRNMQGIPLTGLVGFPAGFTAV
STNEEMKSTLSMLPMMLPGMAAMPQMFGVGGIINSPMATSVPTSLGSTIKSGSSHPDKAT
EDKDACPETKPDTAPSDKPSGSFQEKSEPAVTTSSPVAFNPFLIPGMSPSLLYPSMFLSP
GIGMAIPGVQPNRLSESGGIDHQRRRRKKTKGETQTSEQETVPFTESTESERLSPEAQNC
DTDNTPAPENDKEDSGLKDTLEPTD
NT seq
7998 nt
NT seq
+upstream
nt +downstream
nt
atgataatgaaaatacagaagccagaccaacagctgcccagtttaaaagcacttagctac
tcaccaatgtccagtgcctctataccttgcgaacaccccatcctgccgtcattttcagaa
tccaccccccaagatttccactcagtgacgctactagacaccacctctcacctcttagat
gataatgttctgtacccggactctgggcaggaagaatgcttggctgttgaagcgaccagc
atcaatgggatggagaatagtggaggaggggggactggggtgaagaaaaaacgtaaaaaa
aaggagccaggggaggagaaggtggcaaaaccaaagaaaaagaaagagcccaagaaagtc
aaagagcccaaaaaggtcaaggagccctcagaggccaaggacccgaaagaacaaaagcag
ccgaagagtcccaaggagccgaagaagcctaggaaacctcgggaacctaaaccacctaaa
cagaaaaaagccaatcaggactccgctgccaagaccaaacccaagaagttaagcaaagag
cagggaccaacaccactggagaagaagaaaaagggtaagaggaaagcagagttctctgag
gagagcctggatggagaaccgtctttgctgaacccagcatctcagagcacagaggagtcg
acagaatctctggacagccagaagcgcagatcagggcgccaggtgaagaggcgaaaatat
aatgaagatctggatttcaaggtggtggatgacgatggagaaaccattgcagttttggga
gctggaagagcttcagcattgtcggcttccactttagcctggcaagcagaggaaccccct
gaggatgatgccaatataatagaaaggatcttgtcttctagaatctctcagaaagagttt
atgcacgctggaatccctctggaagtggaggaattttacgttaagtacagaaatttttct
tacctgcactgtaagtgggcaaccctggaagagctggagaaggatcctaggatccagcag
aagatcaagcgctttcggaacaaacaggcgcaaatgaagcacatctttactgagccagat
gaagacatgtttaacccagactacgtggaagtggaccgagtgctggaggtggcccatacg
aaagactctgacacgggagaggaggtaacacatttcttggttaaatggtgttcactgccg
tatgaggagtctacatgggagctagaggaggatgtcgatccggttaaagtaaaagagttt
gaagcactccaaaaggttcctgacctcacccctatggaaaggccggcgtcagaaacctgg
cagaaacttgtgagctctcgcacttacaagaacaacaaccaactgagggagtaccaacta
gagggcatgaactggctgctcttcaactggtacaacaggaaaaattgcatcttggccgac
gagatgggtctggggaaaaccatccagtccatcacgtttttgtcggaaatcttcttcatg
ggcatcaggggccccttcctcataatcgctcctctctccaccatcaccaactgggagcgg
gagttccgaacatggacagagatgaacaccattgtctaccacggtagccagatcagccgc
cagatgatccatcagtatgagatgtactatagggatgaacagggaacacccattccaggg
atctacaagttccagattgtgattaccacgtttgagatgattctagcagattgtcccgag
ctgaagaaaatccggtggagctgtgtgatcatagacgaagcacatcgtttgaagaataga
aactgcaagcttctggaagggttaaaactgatggctctggagcacaaggtcctactcact
gggactccccttcagaattctgtagaggaactgtacagtctgctaaatttcttggagccg
gtgcagttcccatcagaaagcacatttctggaagaatttggagatctcaagacagaggag
caggtaaagaagctgcagtccatcctgaagccaatgatgcttcgaaggctgaaagacgac
gtggaaaaaaacttagctcccaaacaagagactatcattgaggtggaactgaccaacatc
cagaagaagtattaccgggccatccttgagaagaactttacattcctgaccaaaggggcc
aaccagcacaacatgcccaaccttatcaacactatgatggagctgcgtaaatgttgcaac
catccatatctaataaatggtgcagaggagaagattctggaggatttccgtaagcggcac
agcccagacgcacttgatttccaactccaggccatgatccaagctgcaggaaaactggtg
ctgatagataaacttctccccaagctcatagccggcgggcacaaagttctgatcttctcc
cagatggtgcgctgccttgacatcctcgaagactaccttattcaaaggcgatatatttat
gagcgcattgatggcagagtccgtggtaacctccgccaggcggccattgatcgattctgt
aagccagactcggaccgctttgttttcctgctgtgcacaagagccggaggcttgggcata
aacttgaccgctgctgacacctgcattatctttgactctgactggaacccacagaatgac
ctgcaggcacaagctcgctgccatcgcattgggcaaagcaaagctgtcaaagtgtatcgc
ctcataaccagaaattcatatgagcgggagatgtttgacaaagccagcttgaagctgggc
ctggataaagctgtactgcaggacattaacagaaagggaaacactaatggggtgcagccc
ctctcaaaaattgaggttgaagaccttttgagaaaaggtgcctatggggctctgatggat
gaagaggatgaaggttccaagttctgcgaggaagacatagatcagatcctgcagcgccgg
acacaaaccatcaccattcagtccgaagggaagggatccacatttgccaaggccagcttt
gtgtcgtcaggcaatagaacagacatctctctggatgacccaaacttctggcaaaaatgg
gcaaaaattgcagagcttgatacagatgccaggaatgagaaggaaagccttgtgcttgat
cgacctcgagtcaggaagcaaaccaaacactacaactcattcgaggatgatgagctgatg
gaattctcagaactggaaagcgacacagaggagagaccaacacggtccaggcggctgaat
gacaaaacaaggcgctacctccgggccgagtgcttcagagtggagaaaaatctcctcatt
tttggctggggacgctggaaagatatcctgaacctcggccgctttaaatggcacttaaat
gagaaagatatggagatgatctgcagggcactcttggtttactgtgtgaaacattacaag
ggagatgagaaaattaaaagcttcatatgggatctgatcacccccacgaaggacgggcat
aaccaagcacttcagaatcattcaggtttatctgcccctgttccccgtggaagaaaagga
aagaaattaaagaaccaaatgctgttgcctgagataaagaatgcagactggctggccagc
tgtaacccagagattgttctgcatgatgacagctataaaaagcatctcaagcagcactgc
aataaagttctcctgagagtgcggatgttgtattacctcaaagctgaggttttgggagaa
gctgcgagcagagctttggagggagaaaacgccagagacctggaggttttgttgccagat
atagattatgtggagatacccgtggactggtgggacacagaagcagataaatctctcctg
cttggtgtttacaaacatggatatgagaggtactttgccatgcgtgcagatcctgcactt
tgcttcctggacaaggtaggaatgccagacgagacctcgctcactgcagatggagtaaat
gatgtggctccagagttgggagatgggagtgcgatcaaggaagaaaataatgaagagaaa
gtaaatgaacaacaagaggatgcaagtgagagcactgggaaggaggaaaaagcagatgag
gagagcagtatagttgagaatatacaagcccaggatagccctgaagcagacaaactgagc
tggcctgtagcatcagctcttactgcaagacttcgacggttgatcactgtataccagcga
tgcaaccgcagggacctagcgaggcctgaggttttagttcctaccaatcacagttactgg
ttgcaggaggagatggccagacgagcagaaatggaccccattatgaaggaaatgcagaaa
agatggaccagaagagagcaggcagacttctacaggacagtgtcctcatttggtgtcata
tatgatcctgaaaagaagtgctttgactggacccagttccgcgctttatcccgtcttgat
aagaagacagacgaaagcctagaaaagtatttccacagctttgtcgctatgtgcaggaat
gtctgccgccttccactcaggaaagatgatggttcagcggatccctctcttttcttggac
cccataacagaagaacgagcagcgagaactctgtatcgtattgagctactgaggaaggtc
agggaacaggtgctaaggcacccgcaactccatgatcgcctgaaactttgccgaccaagc
ctttatcttccagtttggtgggagtgtggtaaacacgatagagatctactgattggcact
gccaagcatgggcttagccgtacagattactacataatgaatgacccgcaactgtctttc
ctagatgcatatcggaattatgcccaaaataaaaggaatagtggtgagaatatgtgttac
catttccagatgaattccaaggtgcaggagacaccttcttgtcatttggaaaggacatgc
gaatccacaaagctcaaacctgagaaagacatcaaaacagaagttgaagaggctactact
tcaaaccaaatgtgcagccctccggaccttacttgtgaaaattttatttctcaagtcgga
gatatgatctcaaacaaccacgacgagtgctctatgtctgattctcttatgtgcatgatt
tgtgatgagaagacttgcaacagtgctctgttagatgctagcaatagcgagcaaagctct
ctcacccaggagagcttcttggggttggaagctaagaatgggccaaccgattattcactg
aacaaggccaaagaggataacatattacccgttgaggagtctgtatctagagactgtttc
ttgggaagcagtgaaaaagacgagccaatggaaggcatagatagaattaatgaaccgttt
ggtgactcagggagccaccttggtttggcagcagaggactgtgagaaagcacaggtggac
gccattggtcagagggacttggacgatgataacttttgcacatcccttagccagactgct
gaacaatccttaggtctagatcttgagtttctggataaaacatttggtgaccattcagca
ctgagccccggtatcaatgaggacaaagattgtggcataactggagaacattctgaaggc
ccacatttaaatccaatgccagtgcaggagaaagaggaatggggggctgaccttcaggaa
ctaaaagaggatcctattgtgaaatggcaaaatgagctaaatgacatgaaagatcctcca
ctggaggacgtaataaaagaccacaagttagaggacctcagtatagaaaaagacagctca
acatcaaagggtagctacggcatcccttccttgcaggtgaatgaatgtttggatatgaaa
cacaaaaccagccttatgctttctggactcttaaagcaaaaggttgaagacttgaaagag
agaattgctggtgaaaatgttttagaagaatccaatgttccattggaggaaaatgaaacc
atcaagctggaggaatgtgaagtgaagaaagaagtaaaaaaagagagtgtggaagaagag
tgcaactgtaaagattatcttgataaatacacagaagatgatgtaaaagcttgtcccctg
tctgttcctgaagaatcccatcaggatttccaagatggccgtgctcccaccattgctcag
cttttgcaggagaaaaccctctattccttctctgaatggcccaaggatcgagtgatcata
aaccggatagataacatctgccacgcagtgttgaagggtaaatggccgtcctccagccaa
cagtttgaagcccagtgcatggtgccatcctcagtgctgagtacatgtacacggagcagc
agctaccccgcagaagcacaaagcatagcctacagcaatggttcccctgtgcctcaggcg
cagaaggagccattatcggcagcaacgtttccaaatgaagaaaggaagcacagaagacca
tttgagtttgacagtgagaggcaagatggcaaactcagaggcttggagcacctcagccct
tcccatggtcggactaattccgcactgaacggctggagagatgctgccatagagctgtgc
agggagcaggctgccggcggaggctcttcctaccccatgaacaccagcacgccaaagata
gctggcatcggtgggctacagagctccttggggatggacttgtctggcattctgcaagct
ggactgatccatcccgtgaccgggcaaattgtaaacgggagcttgcggagggacgagtcc
tctttgcggaggaggagaggaaggagaaaaaatgtggagggcatggatctgggcttccta
aaggacaggggcatgcatgctggaattctgggactcagagaagtgccaaaccagctaggt
tctgggcacacagaaagctccctctctgcctctgcacgttcgggtgtccctggagctaaa
tttcagccggagaaagttatctccaacaaaagcctcttagagtggcttcggcagcagtcg
gattgtaccattgatatcccaacgtatgggggtagcttttcagacaagccaaagccgagg
cgacagcgctgcaaggaacccagcaaaccagagtttagcttgttggcaggggatgaccga
gtgtcgctagttaacaaggacacagggcagcagggattcctcccagaaagcaagtttggc
agagcgctgccggagccgcttatgcatgaaaccatgcccaggaggcgaggcaggcggccc
cgaagtgagctgctcaaatccacaggaaccatgggctccgattcttcttcgggcatggga
ccactttttatgaacggcctgatcgctgggatggatatagtgggattacagaacatgcgg
aatatgcaagggatcccgttaaccgggctggttgggtttccggcgggattcactgcagtc
tccacaaacgaggaaatgaaaagcaccttaagcatgttacccatgatgctccccggcatg
gctgctatgccgcagatgtttggcgtcggagggattattaactctcccatggcaacatct
gtgccaacgtctttaggaagcacaattaaaagtggtagctcgcaccctgataaagccact
gaggacaaagacgcatgcccagaaactaaaccagacactgcaccttcggacaaaccttct
ggatcctttcaggaaaagtctgaacctgcagtgactaccagcagccctgtagcttttaac
ccattccttatccccggcatgtccccgagtctgctttacccttccatgtttttgtcgcct
ggaattggcatggccataccaggggtccaacccaaccggctgtccgagtcgggcggcatt
gatcaccaacggcggaggaggaagaagacgaaaggggaaacccagacttctgaacaggag
actgtgccctttacagaaagcacagaaagtgagcgactctcccccgaagcccagaactgt
gacacagataatacgccggcacccgagaatgacaaggaggattctggtttaaaagatact
ctagagcccaccgattag
DBGET
integrated database retrieval system
