Xenopus tropicalis (tropical clawed frog): 100498289
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Entry
100498289 CDS
T01011
Symbol
bard1
Name
(RefSeq) BRCA1-associated RING domain protein 1 isoform X2
KO
K10683
BRCA1-associated RING domain protein 1
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
100498289 (bard1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xtr03019
]
100498289 (bard1)
04121 Ubiquitin system [BR:
xtr04121
]
100498289 (bard1)
03036 Chromosome and associated proteins [BR:
xtr03036
]
100498289 (bard1)
03400 DNA repair and recombination proteins [BR:
xtr03400
]
100498289 (bard1)
Messenger RNA biogenesis [BR:
xtr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
100498289 (bard1)
Ubiquitin system [BR:
xtr04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
100498289 (bard1)
Chromosome and associated proteins [BR:
xtr03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
100498289 (bard1)
DNA repair and recombination proteins [BR:
xtr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
100498289 (bard1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_6
Ank
Ank_2
Ank_5
Ank_4
Ank_3
BRCT
BRCT_2
zf-RING_5
ANK_LRRK2
zf-C3HC4_2
Ank_KRIT1
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_3
zf-C3HC4_4
RTT107_BRCT_5
zf-rbx1
DUF6904
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
100498289
NCBI-ProteinID:
XP_002932040
Xenbase:
XB-GENE-492035
UniProt:
A0A8J0QLB5
LinkDB
All DBs
Position
9:complement(58320211..58357250)
Genome browser
AA seq
757 aa
AA seq
DB search
MLLRVRSGNRPQETTREGAPLMDAPGWERTRDALGELERNLCCSKCMSILKDPVCLGGCE
HVFCWTCVNENIGNECPLCNTPAWACDVQINRQLDNMIQLCADLRNLLSKGKTDENKMDL
CQDMLHRLNPANEKHKKKQIKMWFSPRTRKVRCVMEKTERSQQFSSKTCPQMTSYEYVSD
SPDSEPVKKKPDPKPRKNKKLKDINREWGIDTGNEIDELSNPSKEHKSGKSVSFCGSMIM
QHSPEVVVQSSLKNDTLEEINPPKNQCGLDEPVEMQSNSLKEVNCPSPSATFKNQNKEEK
TNPVKRKKNLTPISSASKRLRRRSSDILNERSLKANSPDKGTKTASRHKSAENTESTETA
QCDAKMCSTPPPHAKQKNGGKSGQKITTVQISPNNLTNVKRNHKGETMLHLASIKGDIQG
VEDLLKSGANPNVKDNAGWTPLHEACNLGHTVIVELLLQHHALVNTTGYQNDTPLHDAVK
NGHIAIVQLLLSHGASQEAVNIFGLQPVDYAETEKMKSVLLETQTTRNRLLLRPCLEPSS
HQRKEETVVLIASGLLATQRADLTKLAKTLKAEVCAEYDGKVTHVIVSDEPLLRTMKCMM
GILAGCWTLRFAWVKACLESCDREPEEPYEIHSGPHRARLNKQQLLPQLLDGCHFYFLGC
FKEHRKEDLVELVKAAGGQILIRQPKPDSDVTQTINTVAYHAEADSDQRFCTQYIVYDRT
SKYRPERVRQGKVWFAPSSWIIECITSFQLLPVPQSC
NT seq
2274 nt
NT seq
+upstream
nt +downstream
nt
atgctgctaagggtgcgctctgggaaccggcctcaggaaacaacgagggaaggagctcct
ctgatggatgcgccgggctgggagcggacacgggacgcacttggggagctggagagaaat
ttgtgctgctccaaatgtatgtctatactaaaggatcctgtgtgtttgggtggatgtgaa
catgtgttttgttggacatgtgtgaatgagaatattgggaatgagtgtccactgtgcaac
acacctgcatgggcgtgcgatgtacaaataaacagacaactggacaacatgatacagcta
tgtgctgatctgagaaacctgttgagtaagggcaaaacagatgaaaacaaaatggattta
tgtcaggatatgttgcacagactaaaccctgctaacgaaaagcacaagaaaaaacaaata
aagatgtggtttagcccacggaccaggaaggtgagatgcgtcatggaaaaaacagaaagg
agccaacagttttcatcaaaaacttgtccacaaatgacctcatacgagtatgtttcagat
tctcctgatagtgagcctgtgaaaaagaaacctgatccaaaacctagaaaaaataaaaaa
ttgaaagatattaacagagaatggggtattgatacagggaatgaaatagatgagctatct
aatccaagcaaggaacacaagtcgggtaaatctgtttcgttttgtggctccatgatcatg
cagcatagtccagaggtggttgtacaaagcagcttgaagaatgacacactggaagaaata
aaccctcctaagaatcagtgtggcctggatgaacctgtggaaatgcaatcaaacagtttg
aaagaagtgaactgccccagtcccagtgccacatttaaaaaccaaaacaaagaggaaaaa
acaaatcctgtgaaacgcaaaaaaaacttaactcctatatcctctgcctcaaagcgccta
agaagaaggtcaagcgatatcttaaatgagagaagtttaaaagcaaactcacctgataaa
ggaactaaaacagcgtctcggcataaatctgctgaaaacacagaaagcacggagacggca
caatgtgatgctaaaatgtgttccactcctccaccccacgcgaagcagaagaatggtggc
aaatcagggcaaaaaattacaactgtgcagatctcgccgaataatttgacaaatgtaaaa
agaaaccacaaaggagagacaatgttgcatttggcatcaattaagggtgatattcaagga
gtggaggaccttcttaagagtggggcaaatcctaatgtgaaggacaatgctggttggacc
ccactgcatgaagcttgcaatcttggacacacggtgattgttgagctgctgcttcagcac
catgcgctagtgaacactacaggttaccagaatgatacaccacttcatgatgccgttaaa
aatggccacattgccattgtccagctgctattgtctcatggagcttcccaggaggcagtt
aatatattcggtctgcagcctgtagactatgcagaaaccgagaagatgaagtcggtactg
ctggaaacccagacaacgagaaatcgacttttgttgcgtccatgccttgaaccaagctcg
caccagcggaaagaagaaacggttgtactaatagccagtgggctgctggctactcagcgt
gccgatctgaccaagcttgcaaaaacgctgaaagctgaagtttgtgctgaatatgatggc
aaagttacacatgttattgtaagtgatgagcctctgctacgaaccatgaaatgcatgatg
ggtatattagctggatgctggacgcttcgatttgcttgggtaaaagcctgcctggaatca
tgtgatcgagaaccagaagaaccatatgagattcatagtggaccacaccgagcacgccta
aacaaacagcagctgctgccccagctgttggacggatgccatttctattttcttggctgt
tttaaagaacaccgtaaagaagaccttgttgaactggttaaagccgctggtggacaaatc
cttattcgtcagcctaaacctgatagtgatgtaacacaaaccatcaacactgtggcgtac
catgcagaagccgattctgatcagcggttctgcacgcaatatattgtgtatgacagaact
tccaagtaccgccctgagagagtgcgccaggggaaagtttggtttgccccctccagttgg
ataatagaatgcatcaccagcttccagctcttacctgtgccccagtcttgttga
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