Xenopus tropicalis (tropical clawed frog): 100498350
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Entry
100498350 CDS
T01011
Symbol
sned1
Name
(RefSeq) sushi, nidogen and EGF-like domain-containing protein 1 isoform X3
KO
K24470
insulin-responsive sequence DNA-binding protein 1
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
xtr04990
]
100498350 (sned1)
Domain-containing proteins not elsewhere classified [BR:
xtr04990
]
EGF-like domain-containing proteins
hEGF / cEGF domain-containing proteins
100498350 (sned1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF
hEGF
EGF_TEN
NIDO
EGF_2
fn3
EGF_Teneurin
MAGP
Fn3_Dep-1_4th
Fn3_Dep-1_2nd
EGF_3
EGF_CA
Motif
Other DBs
NCBI-GeneID:
100498350
NCBI-ProteinID:
XP_002933383
Xenbase:
XB-GENE-940133
UniProt:
A0A6I8SUQ5
LinkDB
All DBs
Position
5:complement(125988638..126053055)
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AA seq
1657 aa
AA seq
DB search
MRLPSLFWIFISMVWRAQGMVPLEDFYPFGTKEGDTVTRRQDDGGSGLLPISKAFTFFGD
KHSGLYVNNNGVVSFLREVSQFTPVAFPISGDRRVVAAFWADVDNRRGGNVFYRETEDLV
IVDRATRDVRTYFPELPDFHSTWVFIATWHRVTFYGGDSTSPVNTFQIVLITDGLRSFTI
FNYETIEWTTGRHASSGGDSSGRGGIAAQAGFNAGDGWRYFNIPGSRTDDIARIANTTNV
GVPGRWVFRIDNNHVQVGECRNATSVCWTLRPCQNGGRCIDDCVTGNPSYTCSCLSGFTG
KHCHIDMGKCYSQPCQNDGTCVDEPGSFTCLCTSDFTGTLCETEVSPCTYMTCHNGGECE
DHNGIAVCVCQRGYTGDNCDTELLPCSSSPCLNGGSCENIDAGFRCQCALGFTGTHCEKE
PSACFSSPCMNNGVCKDVGAGYICVCVQGFTGMYCETEIRPCSSAPCLNRGVCRENGETY
SCQCARRFTGKHCETEIRPCFSNPCMNMGTCEDMSEGYSCICTEGYTGIHCETELRPCYS
SPCLNGALCKDFGITYSCVCAWGFTGARCETELHPCFSSPCLNGATCRDVGFAYSCQCAQ
GFTGMHCETEIKPCFSSPCLNGGTCEDLAISFACLCAERYTGLHCETEIQPCFSSPCLNR
GICNNEGAFYSCTCAEGFTGENCEKEVSPCLSSPCLNGATCIDMGASYSCMCPQAFTGAL
CDTEIPSPCTSNPCENKGVCREAEGGYLCDCPAGFSGMHCEHRVSDDCPCRNGGRCADGN
STCHCPPGHFGLLCEYEVTSLPCSMGSQCPDGGSCMEYGGSYLCVCHTDYILSNHSIPSP
CDSDPCLNGGTCESLDDAYTCACPRGFNGRLCEKVKPALCSLSPCRNGGTCKESREEYYC
VCPYPFTGKHCETGMRGPCSSGPCNNGGTCFHYLGKYKCDCPPNFSGRHCEKAELDCGAP
EQVKYAKMIVTSTLPGGRAEYHCNEGYVLSTPNNTSVCSEEGTWSLPPECEEIDECASHP
CHNGASCKDRISHFICECQKGYSGKYCEQETNECLSQPCKNGGTCQDLPGTFKCICPEGF
TGSYCETEVDGCDSSPCQNGGLCENLAGSYLCVCPRGFFGYHCQTVSDMCLLNPCGNRGV
CVSSADGLMSCTCRTGYTGTMCEKELLPPLSLSLGAVGENSVWVFWTPPEDGTGHVLDGF
AVSYTAPDGLSRTDFVERAHTEHELRGLSPGRSYNITIVTVKRNLRHNDISRPLYLTART
RPPNVDRPRINSVMDTSVSVSWSLSPHRHTSIARVRLFLQHPTEPPQQAEQEPSAGEYIF
RDLRPGEKYSVQISTLSRSDPSHPATESLPSAPLIAWTRPHPPSNLTAALVTANSVHLIW
EQPPHGSVDGYIFNVTNNHSTKSRYVPSGKMTSYTVRDLQAGQRYRITVTALRNTPQGPV
NSEPKTVRPQTLQREGPQERRWTPPRILRNRPPPQPHQEVRLLTERGPPPADTPQPHRFT
ELNDGRRRISARFSHRTNKAINVTKEPDPPVKIESSDEAAIPVRQALQLQDPEQRSKEGE
RLGCLETPCLNGGTCVNGDTCDCPLGFKGQQCQLACRKETFSCTRLISETTSHPVWEGGI
CHHLYRRVYKVQNDVCSREVCEGTSRSRAKSRIPSKP
NT seq
4974 nt
NT seq
+upstream
nt +downstream
nt
atgaggttgccttctcttttctggattttcatctctatggtgtggcgtgcacaaggcatg
gtgcctctggaagatttttacccctttggtacaaaagagggggacactgtgacccgcagg
caagacgatgggggatctgggctactgccaatttccaaagccttcacgtttttcggtgac
aagcacagtggtctctatgtgaataacaatggggtggtgtccttcctccgggaggtgtcc
cagtttactcctgtggcatttcctatctctggtgaccgccgtgtggtggctgcattttgg
gcagatgtggataaccgtaggggtggcaatgtgttctaccgcgagacagaggatcttgtg
attgtggatcgtgccactagggatgtacgcacatacttcccagaactgccagactttcac
tctacttgggtcttcattgccacttggcaccgtgtcactttctatggtggtgattctact
tcacctgttaacacctttcagattgtgctgatcacagatggccttcgctccttcaccatt
tttaattatgaaacaattgaatggacaacaggccggcatgccagcagtggtggagacagt
tctggtagagggggcatcgctgcacaggcaggctttaatgcaggggatggctggaggtac
tttaatatccctggctctcgcactgatgacattgcaagaattgcaaacacgaccaatgta
ggggttcctggacgctgggtgttccgtatagacaacaaccatgtgcaggttggggaatgc
aggaatgcaacttctgtgtgctggactctacgtccctgccagaatgggggtcgctgcatc
gatgactgtgtgactgggaatccctcatacacttgttcttgccttagcggcttcactgga
aagcactgccacattgacatggggaaatgctactcccagccctgtcagaatgacggaacc
tgtgtggatgagcctggaagcttcacctgtctgtgtacctcagattttacaggaacctta
tgtgagacagaggtatcgccctgcacatatatgacctgtcataatggtggggagtgcgag
gatcataatggaattgcagtatgcgtgtgtcagcgaggatacacaggtgacaactgtgat
acagaactcttgccatgctcttcctctccttgtttgaatggtgggtcctgcgagaatatt
gatgctgggtttcgctgtcagtgcgctttgggatttactggaacacactgtgaaaaagaa
cccagcgcatgcttttcgtctccctgtatgaataacggagtctgcaaggatgtgggtgct
ggatacatctgtgtgtgtgttcagggattcactggaatgtattgtgaaacagagatcagg
ccatgttcttcagctccatgtttaaacagaggtgtgtgcagagagaatggcgagacttac
agctgtcagtgtgcacgccgattcaccggaaagcattgcgagacagagatcagaccttgt
ttttctaatccctgtatgaacatggggacatgtgaggacatgagtgaaggttatagctgt
atctgcacagaaggttacactggaatccactgtgagacagagttaagaccctgctattca
tccccttgccttaatggggcattgtgcaaggactttggcattacttacagctgtgtgtgt
gcatgggggttcactggtgcacgatgtgagacagagctgcacccatgcttttcttctcct
tgcctgaatggagcaacatgcagagatgtcggttttgcttacagctgtcagtgtgcacag
ggattcacagggatgcactgtgagacagagatcaagccatgtttttcatccccttgtctg
aacggagggacctgtgaggacctggcaatcagctttgcctgtttatgtgcagagagatat
actggcttgcactgcgagacagagatacagccttgcttttcctctccatgcctgaataga
ggaatctgtaataatgaaggtgcattttacagctgtacatgtgcagagggctttacagga
gaaaactgtgaaaaagaggtgagcccttgcctttcttctccctgtctgaatggagcaacc
tgcattgacatgggtgcaagttacagctgcatgtgcccacaggccttcactggggcgctc
tgtgacacggagataccaagcccatgtacatcaaatccttgtgagaacaaaggtgtgtgc
agggaggcagaaggaggctacttgtgtgactgccccgcaggtttcagtggcatgcactgc
gagcaccgtgtgtccgatgactgcccctgcaggaatggagggcgatgtgcagatggaaac
agcacttgtcactgcccgccaggacactttgggcttctctgtgaatatgaggtcacctcg
ctaccgtgcagcatgggttcacagtgtccagatggcggatcctgcatggaatatggtgga
agttacttgtgtgtgtgtcacacagattacatccttagtaaccactcaataccctcaccc
tgtgactcggatccctgcctgaatggtggaacatgtgaatctctagatgatgcatataca
tgtgcctgtccccgtggcttcaatggaagactttgtgagaaagtaaagccagctctgtgc
agcctatcaccttgccgcaatgggggcacctgcaaggagtcacgagaagaatattattgc
gtttgtccctatccattcactggaaaacactgtgagactggtatgaggggcccttgttcg
tcaggtccgtgtaataatggtggtacatgtttccattatcttgggaaatacaagtgcgac
tgcccaccaaacttctctgggcgacactgtgagaaagcagaattggactgtggagcccca
gagcaggtaaaatatgcgaagatgattgtgacatctacactgccggggggtcgagcagaa
tatcactgtaatgaaggctatgtgctcagtactccaaacaacactagtgtgtgcagtgag
gaagggacatggagcttgcccccagagtgtgaagaaatagacgagtgtgcatctcatccc
tgccataatggggcatcctgcaaggaccggatttcccactttatctgtgaatgccagaaa
gggtacagtggaaagtattgtgagcaagaaactaatgagtgtctgtcacagccatgtaaa
aatgggggtacctgtcaggatttgcctgggaccttcaaatgtatttgtcctgagggtttc
actggatcttattgtgagacagaggtggatggatgtgactcttctccgtgccagaatgga
ggcttgtgtgagaacctggcgggttcttatctgtgcgtgtgtccccgcggcttttttggc
tatcactgtcagacagtgagtgacatgtgcctgttgaacccctgcggtaaccgtggggta
tgtgtgtccagcgcagatggattgatgagctgcacctgcagaacggggtacactggaacc
atgtgtgagaaagagctgctgccgccattgtcactgtctctgggtgcggttggagaaaac
agtgtttgggtgttctggacccccccagaagatggcactgggcatgtactggatgggttt
gcagtcagttacactgccccagatggcttatctagaacagactttgtagaaagagctcac
actgaacacgagctgcgggggcttagtcctggccgctcttataacatcacaatagtaaca
gtaaagcgcaacttgcggcacaatgatatcagtcgccccctctacctcacagcacgaaca
cggccacctaacgttgacaggccgaggattaattctgtcatggacacatctgtctcagtt
tcctggtcactaagtcctcacagacacacatctattgctcgtgttcgtctgtttctccag
cacccaacggagccgccccagcaggcagagcaggagccatcagcaggagaatatatcttc
agggatctacgtcctggagaaaaatacagcgtccaaattagcaccttgagccgctctgac
cccagccacccagccacagaaagcctgcccagtgcacctttgatagcctggacacgtcca
cacccaccttccaaccttacggcagctcttgtcacagccaattctgtgcatctaatttgg
gagcaacctcctcatgggtcagtggatggctatatcttcaatgtgaccaataatcacagt
acaaagagccggtatgttcccagtggaaagatgacttcatatacagtccgtgacttgcag
gccggccaacgctaccggataacagtgactgcactacgcaacactccccagggcccagtg
aacagtgagcccaagacagtgcgtccacagacactgcaaagggagggacctcaggagcgt
cgttggaccccccctagaattctgcggaacaggcctcctccacagccacatcaggaggtg
cgactgctgacagaaaggggtcctcctcctgctgatactccacagccgcaccgattcaca
gagctgaacgatgggcgccgtcgtatttcagcaaggttcagccatcgtaccaataaagct
attaatgttacaaaagagccagaccctccagtcaaaattgagagctcagacgaagctgct
attcctgtgaggcaggcgctgcagctacaggaccctgagcaaagaagcaaagaaggagaa
cgactgggctgcctggagaccccgtgtcttaatggagggacctgtgtgaatggagacact
tgtgactgtcctctgggatttaaagggcagcaatgccagttggcctgcagaaaggagacc
ttttcctgcacaagactgatttctgagacaacatcacacccagtgtgggagggaggaatc
tgccaccacctgtacagaagagtttacaaggtacagaatgatgtgtgcagcagggaggtt
tgtgaaggtaccagcagaagcagagcaaaaagcagaatcccttccaagccctga
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integrated database retrieval system
