Xenopus tropicalis (tropical clawed frog): 100498368
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Entry
100498368 CDS
T01011
Symbol
pcdh8l
Name
(RefSeq) protocadherin-8
KO
K16499
protocadherin delta 2
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
xtr04515
]
100498368 (pcdh8l)
Cell adhesion molecules [BR:
xtr04515
]
Cadherins
Protocadherins
100498368 (pcdh8l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
Motif
Other DBs
NCBI-GeneID:
100498368
NCBI-ProteinID:
XP_002937225
Xenbase:
XB-GENE-11536541
UniProt:
F6TRU1
LinkDB
All DBs
Position
7:complement(35762862..35769247)
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AA seq
977 aa
AA seq
DB search
MLLLLKAIPLLLLGLMASQSLCETVQYFIDEEEPSGTVIGVLSHHSIFNTTDIPAYNFRL
MKQFNSSLIHIRDSDGQLSVGERVDREQICRQSLHCTLALDVVSFSKGQFKLINVKVEVR
DINDHRPHFPNDVIHVEVSESTPVGTRIPIEIAVDEDVGSNAIQSFKITNNSHFSIEVQT
KADGVKYADLVLMKELDRESQSTYTFEIMAMDGGEPALSGTAVVNVRVLDFNDNSPVFER
GTVSVDLIEDAPVGYLLLDLNAADADEGVNGEVVYNFSPLVSQEVRRLFKINSRTGGVTL
EDQVDFETKQIYEFEVQAHDLGANPLSASCKVIVHVIDVNDNAPVITITPLTSISEEFAY
IAESAAKETIVALISTTDRDSGPNGQVHCTLHGHEHFMLKQVYEDSFMVVTTTTLDREKI
AEYTLTIVAEDLGFPSLSTKKYYTVKVIDENDNAPVFSKPDYEVSVLENNSPGSYIATVI
ARDPDTDHNGKVTYRLVEAKVMGQSLSTFVALDADSGVLRAVRSLDYERIKQIDFEIEAT
DNGVPKLSNRAQIKLKIVDQNDNAPFITYPLLNNGSAEVLLPISAPQHYLVFQLKAIDAD
EGQNAQLSYTVMRDTQRLFAINRENGEVSLRKQVNPDQIKDLSIVVGVFDSGRPSLSTNA
TIRFILTDSMPSSVEVVILQPSSEDQHQIDLSIIFIAVLAGGCALLLVAILFVACTCKRK
SNGFKQVPEKQGGYSSDHLLKNHPPEMGSSNASVSQSKSCQIPINAESEDCSMSSNSEQC
GDQQTDPKHPESVPSYKTSGWQQDSCSGSISGNSHVEQYSTKDSGKGDSDFNDSDSDTSG
EGQKKSSEQPIQTGTLYTQEVMSYHHVDNHFGHRRISGNQCPNYTLQKGYTVSYSVAPAH
YNTYHTRQPNLLHLPHHRDPYYHVSQPNRMQSDYERNIAARIGTLSPQRLSRIRHQESYQ
NPQVPLQHYPTEIATAF
NT seq
2934 nt
NT seq
+upstream
nt +downstream
nt
atgttacttcttttaaaagctataccactgctgcttttgggtctgatggcttcacagtca
ctctgcgaaactgttcaatacttcatagatgaagaagaaccctctggcactgttattgga
gttttgtcacaccattcaatatttaacaccacagacattcctgcctacaacttccgtctg
atgaagcagttcaacagttcccttattcatatccgggacagcgatgggcagctgagcgtc
ggtgaaagggtagaccgagagcagatctgcaggcagtctcttcattgtactctggctttg
gatgtggtcagtttttccaaaggacaattcaaactgataaatgtgaaagtagaggtaaga
gacattaatgaccacagacctcactttcccaatgatgtaatacatgtggaggtgtctgag
agcacccctgtgggcaccaggatacctatagaaattgctgtagatgaagatgttggctcc
aatgccatccagagcttcaaaatcacaaacaacagtcatttcagtattgaagtgcaaacc
aaagcagatggggttaaatatgcagatttggtcttaatgaaagagcttgacagggaaagt
caatcaacctatacatttgaaataatggctatggatgggggagaaccagctctgtctggc
actgcagtggttaacgtgcgagtcctggacttcaatgataacagccctgtatttgagaga
ggcactgtctctgtggaccttatagaggatgccccagtcggatatctcttactggactta
aacgctgccgatgctgatgaaggtgtgaatggagaggtggtctataatttcagccctttg
gtatctcaagaggtacgtcgcctatttaaaatcaactccagaactggtggtgttaccttg
gaagaccaggttgactttgagaccaagcagatttatgagtttgaagtccaggcccatgat
ttaggcgcaaacccacttagtgctagctgcaaagtaattgtgcatgtaatagatgtaaat
gataatgctccagtcatcaccattaccccacttacttccataagtgaagaatttgcctac
attgcagagtccgctgccaaggagactattgtagctctaatcagtactacagacagagac
tctggcccaaatggacaagttcattgcactctccatgggcatgagcactttatgctgaaa
caagtatatgaggatagttttatggtagttaccactactactctagacagggaaaagata
gcagaatataccctaacaatagtggctgaagacctaggcttcccttcactaagcaccaaa
aaatactacacagtcaaggtgattgatgaaaatgacaatgctcctgtattttcgaagcca
gattatgaagtgtctgttcttgaaaataattctccaggttcttatattgctacagtcata
gccagggacccagacactgaccataacggtaaagtaacttacagacttgtggaagcaaaa
gtaatgggccaatcactttctacatttgttgctcttgatgccgattctggggtgctgcgt
gctgtaaggtctctggactatgaaagaataaaacaaatagattttgagatagaggcaaca
gacaatggagttcctaaactctcaaatcgtgctcaaattaaactcaaaatagttgatcag
aatgataatgctcctttcataacatatccactgctgaataatgggtcagcggaggtcctg
ctgccaatcagtgcccctcagcattatttagtttttcaactcaaagctatagatgcagat
gaagggcagaatgcacagctctcctatacggtaatgagggatacacaaagactatttgct
attaacagagaaaatggagaagtatccttaagaaaacaagtgaacccagaccagatcaag
gacctgagcattgtagtcggagtttttgattcaggaagaccttccttgtccaccaatgct
acaataaggttcatcctcacagactctatgccttccagcgttgaggtggtcattttgcaa
ccatcgtctgaagatcaacaccagatagatctgtccattatcttcattgcagttttggct
ggaggttgtgcattgctgcttgtggccatcctgtttgttgcatgtacttgtaaaaggaaa
agcaatggatttaagcaggtacctgagaaacaagggggatacagtagtgaccatctactg
aagaaccaccctcctgaaatgggatcatccaacgcctctgtgtctcagtccaagtcatgc
cagatcccaatcaatgctgaatctgaagactgcagtatgtcctctaactcagaacaatgt
ggagaccagcaaacagatccaaagcacccggagtctgtcccatcttataagacatctggt
tggcagcaggacagctgttcaggaagcataagtgggaattctcatgtggaacagtacagc
acaaaggacagtggcaaaggagacagtgacttcaatgatagtgactcagataccagtgga
gaagggcagaaaaagagcagtgagcagccaatacagactggtactctatatacacaggaa
gtgatgtcataccaccatgtagataaccattttggtcacagaagaatcagtggtaatcag
tgtcccaactacacactgcaaaagggttacacagtgtcttattcagtagctcctgctcat
tacaatacctaccatacaagacaacctaacctgttgcacctccctcaccacagagaccca
tattaccatgtcagccaacctaacagaatgcagtcagattatgaaagaaatatagcagct
agaattggaacattatctccacaaagattgtctagaataaggcaccaagaatcctatcag
aacccacaggttcctctacagcactaccccacagaaatagctacagccttttaa
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