Xenopus tropicalis (tropical clawed frog): 101731640
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Entry
101731640 CDS
T01011
Symbol
ptchd1
Name
(RefSeq) patched domain-containing protein 1
KO
K24682
patched domain-containing protein
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
xtr04990
]
101731640 (ptchd1)
Domain-containing proteins not elsewhere classified [BR:
xtr04990
]
Other domain-containing proteins
Patched domain-containing proteins
101731640 (ptchd1)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Patched
Sterol-sensing
NPC1_MLD
Motif
Other DBs
NCBI-GeneID:
101731640
NCBI-ProteinID:
XP_004911719
Xenbase:
XB-GENE-987908
UniProt:
A0A6I8SSY4
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All DBs
Position
2:44804137..44876306
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AA seq
914 aa
AA seq
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MVLARLWGSFQSQPVTLPLLSSLCTRMLRKVLHRGLRNCFSRLGFFIASHPVFFISAPVL
ISILLGASFSRYRVEENIEYLLAPKHSLAKIERNLVDSLFPVNRSKHRLYSDLQTPGRYG
RVIITSSRRANMLDQHHTDLILKLHSAVKKIQVHRPGFNYTFAHICMLSNEKTCIVDDIV
HILEELKAARSQNRTNYIITYPITKLKDGKEVYNGHQLGGVTVHSKDRVKSAEAIQLTYY
LQAINSLNEVVAEKWESVFCETVENFQKLNREVKLYPFTSSSLGQDFQKTSRVSERYLIT
SLALVVSLAVICCSMQDCVRSKPWLGLLGLVTISLSTLTAAGIINLTGGKYNSTFLGIPF
IMLGHGLYGTFEMLSSWRKTREDQHVKERTAVVYADTMISFTLTTAMYLVTFGIGASPFT
NIEAARIFCRNSCIAIFFNYLYVLSFYGSSLVFTGYIENNYQHSIFCRKVPKPEILQVKS
LWYRFLMTAKFSDDTADAEETNSYESHLLVCFLKRYYCDWITNTYVKPFVILFYLVYISF
ALMGYLQVHEGSDLRNIVATETRTITYTTVQQKYFSNYSPVIGFYIYESIDYWNTSVQED
VLEYTKGFVRISWFESYLNYLRKLNMSTGLPKKNFTDILRYSFLKNPQYAHFSEDIIIPK
KYNNDVEVVASRMFLVAKTMETNREELYDLLETLRKLSLTSKVKFIVFNPSFVYMDRYAS
SVGAPLQNSCISALFLLFFSAFLVASSIINVWITLTVASVEFGVIGFMTLWKVELDCISV
LCLIYGINYTIDNCAPLVSTFILGKEFSRTKWVKNSLEVHGVAILQSYLCYTVGLIPLAA
VPSNLTRTLFRCLFLIAFVTFFHCFAILPVILTFVPPSKKKRKEKKTPENREEIECVEMV
DLDSTRVVDQITTV
NT seq
2745 nt
NT seq
+upstream
nt +downstream
nt
atggtcctggccaggctctgggggagcttccaatctcagcctgtgactctccccctccta
agctccctctgcactaggatgttgcggaaggttctgcacagggggctgagaaattgcttt
tcgagacttggcttttttattgccagccatccagtattttttatctcggctccagtactg
atctcaatcttgctgggggccagtttcagtaggtatagggtggaggagaacatagaatat
ttgcttgcccctaaacacagcctggccaagatagagaggaacctagtggatagcctgttc
ccagtaaaccgatccaagcatcgtctgtattctgatctgcaaactcctgggaggtacggc
agagtcatcatcacatcttctagaagagccaacatgttggaccagcatcacactgatctt
atcctaaagttgcattcagctgtgaaaaagattcaagtccacagacccggctttaactat
acatttgctcatatctgcatgttgagcaatgagaagacctgcatagtggatgatatagta
catattctggaggaattaaaggcagctcgctcgcaaaacagaacaaactatatcatcacg
tatcccatcacaaagttaaaggatggaaaagaggtgtataatggacaccagctgggaggt
gtaacagttcacagcaaagatcgggttaaatccgccgaggccattcagctcacatattac
cttcaggcaatcaactccctcaatgaagtggtggcagaaaaatgggaatctgttttctgt
gaaactgtggaaaacttccaaaaattaaacagggaagtcaaattgtacccttttacttct
tcatctctaggacaggattttcaaaaaaccagcagggtttccgagcgctacctgatcaca
agccttgccttagttgtctcactggctgtaatctgttgctccatgcaagactgtgtccga
agcaagccttggcttggtcttcttggattggtaactatcagtctttctacacttactgct
gctggaatcatcaatttaacaggtggaaaatacaactctactttcctggggattccattt
atcatgctaggtcatggattatatggaacatttgaaatgctgtcatcttggaggaaaact
agagaagatcagcatgtgaaagagaggactgctgttgtgtatgcagacaccatgatctct
tttactctcacaactgccatgtacttagtcacttttgggattggtgccagtcccttcaca
aacatcgaggctgcaaggattttctgccgcaactcatgtatagcaatctttttcaactac
ctctatgtgttgtcattctatggctctagccttgtgtttactgggtatattgagaacaat
taccagcatagtatattctgtaggaaggtgccaaagcccgaaatattacaggtcaagtca
ttgtggtacagatttctaatgacagcaaaatttagtgacgatacagcagatgccgaagaa
acaaattcctatgaaagtcatcttttagtttgtttcctcaagcgatactactgtgactgg
ataacaaacacatatgtgaagccttttgtaattctcttttatctggtttatatttccttt
gccttaatgggctatttgcaggtccatgaagggtcagatctacgtaacattgtagcaact
gagacacggacaattacgtacacaactgtccaacagaagtatttcagcaactatagccca
gttataggcttttatatatatgaatctatagattactggaatacaagtgtccaggaagat
gttctagaatacacaaaaggatttgtcagaatatcttggttcgagagctacttgaactat
ctcagaaaattgaacatgtccactggattgcctaaaaagaattttacagatatactaaga
tactcgtttttgaaaaacccccaatatgcacatttttctgaggacataatcatacccaaa
aaatacaacaatgacgtagaagtggtagcctccaggatgtttttggtggccaaaaccatg
gaaacaaacagggaagaactctatgaccttctagagactttgagaaaactatctttaacc
tccaaagtgaaatttatagtctttaatccatcctttgtctatatggacagatatgcatct
tcagtcggagcacctttacagaactcttgcataagtgctttgtttctgttgtttttctct
gcatttcttgttgcaagttctatcattaatgtttggatcactttaactgttgcctctgta
gaatttggagtaatcgggttcatgacgttgtggaaagttgaactggactgcatatctgtg
ctttgcctaatctatgggattaattacacaatagacaattgtgcacctcttgtatcaact
tttatccttggaaaagagttttcaaggactaaatgggtgaaaaattctctggaagtgcac
ggggtagctattttacagagctacctatgttatactgttggtctgatccctcttgcagct
gtgccttcaaacctgacccgtacactgtttaggtgcttgtttttaatagctttcgtcaca
ttctttcactgctttgctattttgccagttatactgacatttgttccaccatcaaagaag
aaaaggaaagagaagaaaaccccagaaaaccgcgaagaaattgagtgtgttgaaatggtg
gacttggatagcacgagagtagttgaccaaattacaactgtctga
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