Xenopus tropicalis (tropical clawed frog): 105946827
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Entry
105946827 CDS
T01011
Name
(RefSeq) zinc finger BED domain-containing protein 1
KO
K24637
zinc finger BED domain-containing protein 1 (E3 SUMO-protein ligase ZBED1) [EC:2.3.2.-]
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xtr03000
]
105946827
04121 Ubiquitin system [BR:
xtr04121
]
105946827
Transcription factors [BR:
xtr03000
]
Eukaryotic type
Zinc finger
Cys2His2 BED
105946827
Ubiquitin system [BR:
xtr04121
]
Ubiquitin ligases (E3)
UBL E3 ligases
105946827
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dimer_Tnp_hAT
zf-BED
OrsD
GAF_PdtaS
hAT-like_RNase-H
Ribosomal_60s
Dynactin_p22
Motif
Other DBs
NCBI-GeneID:
105946827
NCBI-ProteinID:
XP_012815344
UniProt:
A0A803JW21
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All DBs
Position
10:21723484..21726464
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AA seq
637 aa
AA seq
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MDEENVTNKEKEEEQLVPKTGAVSVVWKYFGFKKSDVEQTIIICKCCRAKVVAAGGNTSN
LLHHLRHKHLLKYQECMKLRSESSSTSAGSDRVGTATQNATQTSLKDAFAKGTAYDKKSK
RWNDITNAITFHLAKDLVPLNTVEKVGFKQMIKVLDPRYVLPSRNYFSRTALPNLYQQHR
AKVEADLATVHHFSATTDLWSSRSMEPYLSLTVHFISDDWVLHSHCLQTSFFPDDHTGEL
LAAGLQEALDSWGLSEHRLVAITTDNGANIIKAIELHNWTRFQCFGHRLHLAIETAMKDD
RIQRAVGVCKKIVAAFSYSWKKRREMAKVQNELGLPKHQLTTETPTRWGSRQMMIQRVLE
QERAINQVLAADKKSRHLILRWQDVEVLEAVNKVLSPLQDFTDALSGEHYVSVSYVKPVL
HLFNTTILAEEDDNSELTRDVKRNILAYLNEKYSNADTDDLLDIASFLDPRFRTTYTKKE
NVEHVLSRAMEEIKCLKDQQQDPLPGPSGAAAAAAGPAAPPEEKRKKSLSSFFKKQSTSS
MGCSGETLSEEENIKMELRAYLQTTEVESDADPLKWWRCYQANFPRVAKLAQQYLCIPAT
SAPSERVFSTGGNIVTCHRAALKPETVDRLVFLAQNL
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atggacgaagaaaatgtcacaaacaaagagaaagaggaggaacaacttgttccgaaaaca
ggagccgtgtcggttgtgtggaaatacttcggctttaaaaaatctgacgttgagcaaaca
atcataatatgtaaatgctgtcgggctaaagttgtagccgcaggaggcaacacaagcaat
ttgcttcaccacctccgccacaaacatctcctgaaataccaagaatgcatgaaattaaga
tctgaatcctcttccacatctgcaggtagcgatagagttggcactgcaacacaaaacgcg
actcagacgtcactcaaagacgcgtttgctaaaggcactgcctacgacaagaaaagcaaa
cggtggaatgatattaccaacgctattactttccacttggctaaagacctggtaccgctt
aatacagttgagaaagttggcttcaagcagatgattaaagtactggatcccagatatgtt
ttaccaagtcgaaattactttagccgaacagcactccctaacttgtaccaacagcacaga
gccaaggtagaagcagacttggctaccgttcaccacttctcagcaacaactgatttatgg
tctagtcggagcatggagccatacctaagcctgactgttcactttataagtgacgactgg
gtgttgcatagtcattgtctgcaaacaagctttttccccgatgatcacactggcgagtta
ctagcggcaggtttgcaagaggcactggattcctgggggctgtcggagcacagactagtg
gccatcacaacagacaatggagccaacatcattaaggcaattgagctgcataattggaca
agattccagtgctttggtcacaggcttcacctagccattgagaccgctatgaaagatgac
cgcatacagcgtgcagttggagtctgcaaaaaaattgtggcagccttttcatactcatgg
aaaaaaaggagggaaatggccaaggtacagaatgaactgggtcttccaaagcaccagctc
acaactgagacgcccaccaggtggggatcacgtcagatgatgattcaaagagtattagag
caagagagagccatcaatcaggttctagcagctgataaaaagtcaaggcatttaatcctc
aggtggcaagatgtggaagtcctggaggctgtcaacaaggtgttgagcccactccaggac
ttcacagatgccttatctggagagcattatgtcagcgtatcatacgtaaagccagtactt
catctgttcaacactaccattcttgctgaggaagacgacaacagtgaactgaccagggat
gtgaagagaaacattctagcctacttgaacgagaaatactccaacgctgacacagatgac
ctgctcgatatcgcatctttccttgatccacgattcagaaccacctacacaaagaaagaa
aatgtggaacatgtcctctccagagccatggaagaaatcaagtgcctcaaggatcaacag
caagaccctctccctgggccttctggtgctgcagcagctgcagcagggcctgctgctcca
ccagaggaaaagagaaaaaagtccttgtccagttttttcaaaaagcagagcaccagcagc
atgggctgcagcggagaaacactctcagaggaggaaaacatcaagatggagctgagagcc
tacttgcagaccacagaggttgaaagtgatgcagaccctttgaagtggtggagatgctat
caggcaaacttcccccgtgttgcaaaactagctcaacagtatttatgcatacctgccaca
agtgctccgtctgagagagtgttcagcactggtggcaatatcgtcacatgccatagagct
gcactcaaaccagaaactgtggaccgtctggttttccttgctcaaaatttgtga
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