Xenopus tropicalis (tropical clawed frog): 116410384
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Entry
116410384 CDS
T01011
Name
(RefSeq) cleavage stimulation factor subunit 3-like
KO
K14408
cleavage stimulation factor subunit 3
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
116410384
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xtr03019
]
116410384
Messenger RNA biogenesis [BR:
xtr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
116410384
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
Motif
Other DBs
NCBI-GeneID:
116410384
NCBI-ProteinID:
XP_031756598
UniProt:
A0A8J1JFF8
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Position
4:complement(18128355..18226863)
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AA seq
701 aa
AA seq
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MRKCGVNAYVGDAAYVKAKNDDKVEKLFQRCLMKVLHIDLWKCYVSYVRETKGKLPSYKE
KMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPM
INIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQ
NTPQEAQQVEMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAGQY
LEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKTH
SIYNRLLAIEDIDPTLVRHSVYIQYMKFARRAEGIKSGRMIFKKAREDPRTRHHVYVTAA
LMEYYCSKDTSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL
PPEKSGEIWARFLAFESNIGDLASILKVEKRRYTAFKEEYEGKETALLVDRYKFMDLYPC
STSELKALGYKDVSRAKLAALIPDPVDRKPEYPKPDTSQMIPFQPRHLAPPGLHPVPGGV
FPVPPAAVILMKLLPPPICFQGPFVQVDEIMEILWRCKLPDTVEEAVRIITGSQAEMNME
GNGPVEGKTLLNKSVKRPNEDSDDEEEKGSVVPPVHDIYRTRQQRRESAGKALSVLFRRL
ISFGNVREEQQKKKEGLVVEPKKEKENESYKVRCRCWNCAL
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atgcggaagtgtggcgtgaatgcgtacgtaggcgatgcagcgtatgtaaaagctaaaaat
gatgacaaagttgaaaagctgttccagaggtgcctcatgaaagtcttgcacatagatctg
tggaaatgctatgtgtcctatgtgcgggaaaccaaagggaaactgccaagttacaaggag
aaaatggcacaggcgtatgactttgcgcttgataaaattggcatggaaatcatgtcctat
cagatatgggtcgactacatcaatttcctgaaaggagtagaagctgtgggatcttatgct
gagaaccaaagaattacggccgtccgcagagtttaccagcgaggctgtgtcaaccccatg
attaacatcgaacagctttggagggattacaacaagtatgaagagggtatcaacatccat
ttggcaaagaaaatgattgaagacagaagtagagattacatgaatgcaagaagagttgca
aaggaatatgaaacggtgatgaaaggtctggatcgcaatgctccttccgtgcctcctcaa
aacacaccccaggaagcacagcaggtggaaatgtggaaaaaatatatacagtgggagaag
agtaaccctctgcgaacagaggaccagaccctaataacaaaaagagttatgtttgcatat
gagcagtgtttgttggtactgggacatcatccggacatctggtatgaagccggacaatac
cttgaacaatctagcaagctgcttgctgaaaaaggggacatgaacaacgctaaactgttc
agcgacgaagctgccaatatctatgagcgggcaatcagtacacttctaaagaaaaacatg
ttgctgtattttgcctacgcagactacgaagagagccgaatgaagtatgaaaaaacacac
agcatatacaacagattactcgccatagaagatatagatcccaccttggtaagacattca
gtctatattcagtacatgaagtttgctaggagagctgagggcatcaaatctgggagaatg
attttcaagaaagccagggaagatcccaggacccgtcatcacgtttacgtcactgcagcc
ttaatggagtattactgtagcaaggatacatcggtggccttcaagatttttgagttagga
ctaaagaaatatggagacatccctgaatatgtccttgcctacatagattatttgtctcac
cttaatgaggataataacacaagagtattatttgaacgcgttttaacatcaggaagtttg
cctcccgaaaaatcaggtgagatttgggcacgcttcctggcctttgaaagtaacattgga
gatttagctagtatactgaaagtggaaaaaaggagatacacagcattcaaggaggagtat
gaagggaaggagacagcacttcttgtggatagatacaaatttatggacttgtacccctgc
tccacaagtgaactgaaagctttgggatacaaggatgtatcgagagccaaactggcagca
ctaatcccagaccctgttgaccgaaaaccagagtatcccaaacctgacacgtcccagatg
atccctttccagccgcgacatttagctccacctggactccatcctgttcctggcggagta
ttcccagtccctccagctgcagtgatcttaatgaagctgcttcctccccccatttgcttc
cagggcccattcgtacaggttgatgagattatggaaatcttgtggaggtgcaagctgccg
gacacagtggaagaggcggtgaggatcattacaggaagccaggcagagatgaacatggag
gggaacggaccagttgaaggcaaaacactactaaataaatctgtgaaaagacccaacgag
gattccgacgatgaagaagagaaggggtctgtggttcctcccgtccacgatatatacaga
acccggcagcagagaagagaatccgctgggaaagctttgtcggttttatttcgaagactg
atcagctttgggaacgtccgagaggagcagcagaaaaagaaagaggggctggtggtggag
ccaaagaaagaaaaggagaatgagagctacaaagtgaggtgccgctgctggaattgtgct
ctctaa
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