Xenopus tropicalis (tropical clawed frog): 116410519
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Entry
116410519 CDS
T01011
Name
(RefSeq) collagen alpha-1(III) chain-like
KO
K19720
collagen type III alpha
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
116410519
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
xtr00536
]
116410519
Glycosaminoglycan binding proteins [BR:
xtr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116410519
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Other DBs
NCBI-GeneID:
116410519
NCBI-ProteinID:
XP_031757225
UniProt:
A0A8J1JJM2
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Position
4:152427270..152469846
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AA seq
744 aa
AA seq
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MEGCAYKALTRDPDKRNSPVKEKEPLYFSRGETGQRGEPPGRNWAARGTPGEKLGSGGSP
RGETGQRGEPPGRNWAARGNPGEKLGSGGSPRGETGQRGEPPGRSWEARGAPGEELGSGG
NPREGAGQRGEPPGRSWAAGGTPGEELGSTGSPRGGAGQRGEPPGRSWAAWGAPGKELGS
AGSPRGGAGQRGEPPGRSWAARGAPGEELGSGGSPRGGAGQRGEPPGRSWAARGAPGEEL
GSGGNPRGGAGQRGEPPGRSWAARGAPGEELGSRGEPPGRSWAARGAPGEELGSAGSPRG
GAGQQGGAPGEELGSGGSPRGETGQRGETPGRNWAARGDPGEKLGSAGSPRGEAGQRGAP
PGRSWAAGGAPGKELGSAGDPREGAGQRGEPPGRSWAAWGAPGKELGSGGSPRGGAGQRG
EPPGRSWAAGGAPGEELGSAGSPGEELGSAGSPGEELGSELGSGGSPREGAGQRGEPPGR
SWAAGGAPGEELGSAGSPRGGAGQRGEPPGRSWASGGAPGEELGSAGSPRGGAGQRGEPQ
RRSWAAGGAPGEELGSAGSPRGGAGQRGEPPGRSWAARGAPEEELGSAGSPRGGAGHCGE
PPGRRWAARGAPGEELGSAGSPRGGAGQRGEPPGRSWAARGAPGEELGSAGSPRGGAGQR
GEPQRRSWAARGPPGEALGSAGSPRGGAGQRGEPPGRRWAARGAPGEALGSAGRPRGGAG
EPPGRRWAAQGTPGEVLGMGWVLR
NT seq
2235 nt
NT seq
+upstream
nt +downstream
nt
atggagggatgtgcatataaagcactgactagagatccggacaagagaaattccccagtg
aaagagaaggagccactatacttctcccggggagaaactgggcagcgcggggaacccccg
gggagaaactgggcagcgcggggaacccccggggagaaactgggcagcggggggagcccc
cggggagaaactgggcagcggggggagcccccggggagaaactgggcagcgcggggaaac
cccggggagaaactgggcagcggggggagcccccggggagaaactgggcagcgcggggag
cccccgggaaggagctgggaagcgcggggagcccccggggaggagctgggcagcgggggg
aacccccgggaaggagctgggcagcgcggggagcccccgggaaggagctgggcagcgggg
ggaacccccggggaggagctgggcagcacggggagcccccggggaggagctgggcagcgc
ggggagcccccggggaggagctgggcagcgtggggagcccccgggaaggagctgggcagc
gcggggagcccccggggaggagctgggcagcggggggaacccccggggaggagctgggca
gcgcggggagcccccggggaggagctgggcagcggggggagcccccggggaggagctggg
cagcgcggggagcccccgggaaggagctgggcagcgcggggagcccccggggaggagctg
ggcagcggggggaacccccggggaggagctgggcagcgcggggagcccccggggaggagc
tgggcagcgcggggagcccccggggaggagctgggcagcaggggggagcccccggggagg
agctgggcagcgcggggagcccccggggaggagctgggcagcgcggggagcccccgggga
ggagctgggcagcaggggggagcccccggggaggagctgggcagcggggggagcccccgg
ggagaaactgggcagcgcggggagaccccggggagaaactgggcagcgcggggagacccc
ggggagaaactgggcagcgcggggagcccccggggagaagctgggcagcggggggcgccc
ccggggagaagctgggcagcggggggagcccccgggaaggagctgggaagcgcgggggac
ccccgggaaggagctgggcagcggggggagcccccgggaaggagctgggcagcgtgggga
gcccccgggaaggagctgggcagcggggggagcccccggggaggagctgggcagcgcggg
gagcccccggggaggagctgggcagcggggggagcccccggggaggagctgggcagcgcg
gggagccccggggaggagctgggcagcgcggggagccccggggaggagctgggcagcgag
ctgggcagcggggggagcccccgggaaggagctgggcagcgtggggagcccccgggaagg
agctgggcagcggggggagcccccggggaggagctgggcagcgcggggagcccccgggga
ggagctgggcagcgcggggagcccccggggaggagctgggcaagcgggggagcccccggg
gaggagctgggcagcgcggggagcccccggggaggagctgggcagcgcggggagccccag
aggaggagctgggcagcggggggagcccccggggaggagctgggcagcgcggggagcccc
agaggaggagctgggcagcgcggggagcccccggggaggagctgggcagcgcggggagcc
ccagaggaggagctgggcagcgcggggagcccccggggaggcgctgggcattgcggggag
cccccggggaggcgctgggcagcgcggggagcccccggggaggagctgggcagcgcgggg
agcccccggggaggagctgggcagcgcggggagcccccggggaggagctgggcagcgcgg
ggagcccccggggaggagctgggcagcgcggggagccccagaggaggagctgggcagcgc
ggggagccccagaggaggagctgggcagcgcggggaccccccggggaggcgctgggcagc
gcggggagcccccggggaggcgctgggcagcgcggggaacccccggggaggcgctgggca
gcgcggggagcccccggggaggcgctgggcagcgcggggagaccccggggaggagctggg
gagcccccggggaggcgctgggcagcgcagggaacccctggggaggtgctgggcatgggc
tgggtgctcagatga
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