KEGG   Xenopus tropicalis (tropical clawed frog): 116410817
Entry
116410817         CDS       T01011                                 
Symbol
trim54
Name
(RefSeq) tripartite motif-containing protein 54
  KO
K10653  tripartite motif-containing protein 54
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    116410817 (trim54)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:xtr04121]
    116410817 (trim54)
Ubiquitin system [BR:xtr04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRIM/RBCC proteins
    116410817 (trim54)
SSDB
Motif
Pfam: zf-RING_UBOX zf-C3HC4_2 RING_XB3-XBAT31 zf-C3HC4 zf-B_box zf-RING_5 TRIM_CC zf-RING_2 zf-C3HC4_3 zf-C3HC4_4 zf-RING_6 CoiA_N Sina_RING Zn_ribbon_FGT1_2
Other DBs
NCBI-GeneID: 116410817
NCBI-ProteinID: XP_031757802
UniProt: A0A8J1JIV9
LinkDB
Position
5:complement(162378923..162401350)
AA seq 361 aa
MNFAVGFKPLAGDTQTMDNLEKQLICPICLEMFTKPVVILPCQHNLCRKCANDIFQASNP
LWQSRGSSTVSSGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESSRPMNPKS
EQHLMCEEHEDEKINIYCLSCEVPTCSMCKVFGAHKDCEVAPLSNIYKRQKSELSDGIAM
LVAGNDRIQAIISQMEEICKSIEDNSRRQKQLLSQRFDSLYNILEERKKELLQVVTRQQE
EKLQCVRGLIRKHGDHLEGTSKLVESSIQSMEEPQMAAFLQNAKELIKKITEMSKVSTID
RPEPGYENMDHFSVNVDYVSEMLRTIDFQSGASGQEEEEAIDTEETETVGEEDRTEPTEG
H
NT seq 1086 nt   +upstreamnt  +downstreamnt
atgaattttgcggtgggtttcaagcctttggccggagacacccagaccatggacaacctg
gagaagcagctcatctgccccatctgcctggagatgttcaccaaacccgtggtgatcctg
ccctgccagcacaacctgtgccgaaagtgtgccaatgatatcttccaggcctccaatcct
ctgtggcagtcacgaggatccagcactgtctcctcaggggggcgatttcgctgcccttca
tgccgccatgaggtggtgctggacagacacggggtgtacgggctacagaggaacctactg
gtggaaaatatcattgacatttacaaacaggaatcgagcaggcccatgaaccccaaatct
gagcagcacctcatgtgtgaggaacatgaggatgagaagatcaacatctactgcctgagc
tgcgaggtaccgacctgctctatgtgcaaagtgtttggggcccataaagactgcgaggtg
gcccctctctccaacatctacaaacgacagaagagtgagctgagtgacggcattgccatg
ctggtggcaggaaacgaccggatccaggcgatcatctcccagatggaggagatctgcaag
agcatcgaggataacagccgccggcagaagcagctcctcagccaacgcttcgactccctc
tataacatcctggaggagcgcaagaaggaactgctgcaagtggttacccggcaacaggag
gagaaactgcagtgtgtgcgggggctcatccgcaagcatggggaccacctagagggcacc
tccaaactggtagagtcttccattcagtccatggaggagccacaaatggcagccttcctg
cagaatgccaaggagctgatcaagaagatcacagagatgtccaaggtctccaccattgac
cgcccggagcccggatatgagaatatggaccatttctccgtcaatgtggattatgtctca
gagatgctacgaaccattgatttccagtcaggtgcctcagggcaggaagaagaagaagcc
attgatacagaagagacagagactgttggggaggaagatcggacagaacctacagaaggc
cactga

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