Xenopus tropicalis (tropical clawed frog): 116412367
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Entry
116412367 CDS
T01011
Symbol
shoc1
Name
(RefSeq) protein shortage in chiasmata 1 ortholog
KO
K28108
shortage in chiasmata 1
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
xtr03036
]
116412367 (shoc1)
Chromosome and associated proteins [BR:
xtr03036
]
Eukaryotic type
Meiosis-specific proteins
Others
116412367 (shoc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF5587
Motif
Other DBs
NCBI-GeneID:
116412367
NCBI-ProteinID:
XP_031762381
UniProt:
A0A803JLJ5
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All DBs
Position
1:complement(107918811..107969286)
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AA seq
1475 aa
AA seq
DB search
MDTVMFPAFKFHALDYAYENLIRQKISMSWMIIPFPKGIQKNENYCHSRIFTNDNYRRPW
TRTKTLSGCDVQHEDSMFDEWKNCFNSDVFLDKYHISVFCHKGTLFEVIPSSNPSSQLDL
VEISTTENDTIKSETNYEDCWKTGTDCLVEKPFEDYVLREDVVFVDHLALFRHHMPNLSV
LLSRLKMIPVEDPFTIWHKVCSSQEHHLRMEAFKESEKTIADFSTEQFHAMPLEHEKDLM
LPFKLKVSNKTRASGTSVTDLIRVMELTPEYVALELKEGQTADLMKAVFKLESFIEKCSE
SESCEVLLDIASFFSYQEGELEVPFTPPLPPQEYDHISPLYVNLVPEEMSPAPHILQITD
TSKDILENLTLNSEIYPLLLKVPCVEYTFRHLTLSKLKELMSISLEIVELQALVPMASNW
WSEFGLNVECTLTHSIEPLIATNLTSNLISSKLPVESFRKISMGEVERLLEEMAFSEKQR
ATLQKCEKQSKSNDCFFAKIKPLCYPSQRVPNVVSGDTADNLIPDVFLIDRQEIDHLCSP
IPCPSTEKTRPNSTNCNNLSEPSKTNPYGNSISSNCNTSHLESQTHSADTSDLLSDFIML
RSRKSQDSCHIYVKESSLKETKDVDASCPESSLVNCFTSDGITELRSKDEPECLILSKNI
PPAERQCLAYRILEAEALPILNKLVDLNVPACMNWNFSSICFDRTQFFIRQQEKLVTDIL
NMGKKEDREITIFKYAALFHILVTLRDLILMCTFDKALVYLCKAKEIYKSALGASLDGVW
RKLRIIQFVGERDREENPKIKTLKALLLQWKEKRYSEDLQSKVLIITRLNQGDVQCIILN
ALSNTEGMKTVSLCPTKDTCLNRKTVLDRLKGCSCIVVNNKYIGRDFPWTYFSLVIEYDG
TDCWQTLCQDLKLHYVTLITSLQDSAFMAGKSTNISFADMLFDIKVPYVFVTSEGLISKP
EILQLMESRYNITFIERSSSASLQLFGATDQYAIISLDWRTSIVMQDIEELLDIASTEKL
ILKLVALSLQYSWCWLILYSKQRYHSIYSLSGNVLNSLALIYASILPLASKPDELEVKVF
IMPGVEETALLIRKIADYTLMSYKSDPYKWLDRSWLSIMPSEEEKCLLAFPCINPMVAQL
MLRKGSSLKWLLSRSKEQLQAIMPDVPSKVLKHFTEITSLHRLRASSQEQDMSHVTDSCV
QTDNDHVPAPVTADNIHDSSNSQTLGNSQTSSAAAINAYEDILAAATTKSVSFKELFGCS
ETQTIQSNANESNMLSKNHPVVSSVERRNYSFLRVGTSMSSFHTETEGDINPYQPKKTQP
HMSLYSKGNFGVTAFAKDAEDYNQDFGYHLSKGNHGTRQDSQRLHPNEKSFFTDLFSPKP
SQTPMYNPKELSDAVFLPSEKPRALYTPNQRTEAFCLAHISKVCYDLSNAENTSLTDAEK
SRGKQYFQQFQPKRRKLLYERIPGRCDGQTRLKFF
NT seq
4428 nt
NT seq
+upstream
nt +downstream
nt
atggacacagttatgttcccagcctttaaatttcatgctttggactatgcatatgagaat
cttataaggcaaaagatttccatgtcttggatgattattccatttcctaaaggaatccaa
aaaaatgaaaactactgtcacagcaggatcttcaccaatgataactaccgaagaccatgg
acaaggactaaaacactctcaggctgtgatgtgcaacatgaagattctatgttcgatgag
tggaaaaactgcttcaactctgatgtttttttggataagtaccacatatcagtattttgt
cataagggtacactttttgaggttataccaagttcaaaccccagctcccagttagacttg
gtggagatctccactacagagaatgatactataaaaagcgagacaaattatgaagactgt
tggaagactggtacagactgcttagtggaaaagccttttgaagattatgttcttcgagag
gacgttgtgtttgttgatcatcttgctctttttaggcatcatatgccaaatctgtcggtc
ctcctaagccgcctgaaaatgatccctgtagaagacccttttactatttggcacaaggtc
tgttcttcacaggaacaccatctcagaatggaagcttttaaggaaagtgaaaaaacaatt
gcagatttctctacagaacaattccatgcaatgcccctagaacatgaaaaggatctcatg
ctgccttttaaactcaaagtcagcaataaaacaagagcaagtggaacctctgtaacagat
cttatcagagtaatggagctgactcctgaatatgttgcactagagttgaaagaaggacag
actgcagatttgatgaaagcagtgtttaaattggaatcttttatagaaaaatgctctgaa
tctgagagctgtgaagtactgttagacatagcttcattcttttcttaccaagagggtgag
ctggaagtcccatttactccaccacttcctcctcaggagtatgaccacatttcacctctg
tatgttaatcttgtaccagaagaaatgtcacctgctcctcatatcttacaaatcacagat
acatccaaagatatactggaaaacctgacattaaattcagagatttaccctcttttgctt
aaagttccatgtgttgagtacacattccgtcatttgactctttcaaaactaaaagagtta
atgtccattagtttggagattgttgaattacaagctcttgtcccaatggcaagtaactgg
tggagtgaattcggattaaatgtggagtgcacacttactcattccatagagccactgata
gcaactaatttaaccagcaatctaatatcaagcaaattacctgtagagtcattcagaaaa
atctctatgggcgaagttgaacgattgctggaggagatggcattctctgaaaaacaaaga
gccacattgcagaaatgcgaaaagcaatctaaatccaatgactgtttctttgcaaagata
aaacccttatgttacccttcacaaagggttccaaatgtggtttctggagatactgctgat
aacttaattcctgatgtatttctcattgatagacaggaaattgatcatttatgcagccca
attccttgtccaagcacagagaagacaaggcctaattcaacaaattgtaacaacttatca
gaacctagcaaaacaaatccatatggaaattctatctcaagcaattgtaacacaagtcat
ttagaaagccaaacacattcagcagatacatcagacctacttagtgactttataatgctt
agaagcagaaaatcacaagactcatgccatatttatgttaaagagtcttctttgaaagaa
actaaagacgttgacgcttcctgtccagaatctagtctagttaactgcttcacatctgat
ggtatcactgaactcagatcaaaagatgaaccagaatgtcttattttgtctaagaacatt
ccaccagcagaaagacagtgtctggcatacagaatccttgaagcagaagccttgccaata
ctgaacaaactggtagacctaaatgtacctgcatgcatgaactggaacttttcatctatc
tgctttgacagaactcaatttttcataaggcaacaagaaaaacttgtgacagacatcctt
aatatgggtaagaaagaagacagggagataacaatatttaagtatgcggctcttttccat
atactggtgacactacgagatcttatcctgatgtgcacatttgataaagcattagtatat
ttgtgcaaagcaaaggaaatatataagagtgcactgggagccagtttagatggtgtgtgg
agaaaattacggattatccagtttgttggagagagggatcgagaagaaaaccccaaaatc
aaaacattaaaagccctgttattacagtggaaggaaaagaggtacagtgaggatttacag
tcaaaagttcttattataacacggctaaaccaaggtgatgtccaatgcatcattcttaat
gcccttagcaatacagaaggtatgaagacagtcagtttatgtcctacaaaagacacatgt
cttaacagaaaaactgttttggacaggttaaaaggctgttcctgcattgtagtaaataac
aaatatataggaagagattttccttggacttatttttcactggtgattgagtatgatggt
actgactgctggcagacactgtgccaagacctaaaacttcattatgtcacccttataacc
agcctacaggattccgcctttatggctgggaaatctacaaatatcagttttgctgatatg
ctttttgatatcaaagttccatatgtatttgtgacatcagaaggacttataagcaagcca
gaaattctacagctcatggagtccagatacaatataacctttattgagagaagcagtagt
gcatccttgcagctgtttggagccactgaccaatatgcaatcatttctctggactggcgc
actagcattgtaatgcaggacatagaggaactgctggatatagcgtctacagagaaacta
atccttaagcttgtagccttgtctctgcagtacagctggtgttggctcatattatattcc
aaacagaggtaccattctatatacagtctttctggaaatgtactaaatagtctggcctta
atttatgcatcaattcttccattagcttcaaagcctgatgaactggaagtaaaggttttt
attatgccgggggtagaggaaaccgccttgctaattcgcaagatcgctgactacacactt
atgtcttataagagtgacccctataagtggctggatagatcctggctgtctatcatgcct
tctgaggaagaaaagtgtttacttgcatttccttgcattaatcccatggtggctcagctg
atgctgcgtaaaggctcatccttaaaatggctcctgtcaagatcgaaggaacagctgcag
gcaatcatgccagatgtgccctcaaaagtgctaaagcatttcactgaaattacttcctta
catcggttaagggcttcctcccaggaacaagatatgtcacatgtaacagacagttgtgta
cagacggataatgaccatgtcccagctccagtaactgctgataatatacatgatagctca
aatagccaaacacttggcaacagtcagacctccagcgcagctgccattaatgcttatgaa
gatattttagcagcagccacaacaaaaagtgtctcttttaaagaactattcggatgctcg
gagacacaaactattcagtccaatgcaaatgaatcaaatatgttgagtaaaaaccatcct
gttgttagcagtgtggaaagaagaaattattcatttttgagagtgggtacatcaatgtct
tcatttcacacagagacagaaggtgacattaatccttaccaacccaaaaaaacacagccc
catatgtctttatattctaaaggaaacttcggtgttacagcttttgctaaagatgcagag
gactacaatcaagatttcgggtaccatctttccaaaggtaatcacggaactaggcaagat
tcacaacgtttgcatcctaatgaaaagagcttctttacagacttatttagcccaaagcca
agtcaaactccaatgtacaacccaaaggaattatcagatgctgtgtttctgccttcagaa
aagccaagagccttgtatactccaaatcaaagaactgaggcattttgtcttgcccatata
tcaaaagtatgctatgacttaagcaatgctgaaaataccagcttaacagatgcagagaaa
tcaagaggaaaacaatatttccaacaatttcaacccaagagaaggaagctcttatatgaa
agaattccaggacgatgtgatggacaaactcggctaaagttcttctga
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