KEGG   Xenopus tropicalis (tropical clawed frog): 394525
Entry
394525            CDS       T01011                                 
Symbol
hltf
Name
(RefSeq) helicase-like transcription factor isoform X2
  KO
K15711  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:xtr04121]
    394525 (hltf)
   03400 DNA repair and recombination proteins [BR:xtr03400]
    394525 (hltf)
Enzymes [BR:xtr01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     394525 (hltf)
Ubiquitin system [BR:xtr04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    394525 (hltf)
DNA repair and recombination proteins [BR:xtr03400]
 Eukaryotic type
  TLS (translesion DNA synthesis) factors
   Rad6 epistasis group
    394525 (hltf)
SSDB
Motif
Pfam: SNF2-rel_dom HIRAN Helicase_C zf-C3HC4_2 zf-C3HC4 zf-RING_2 zf-RING_UBOX zf-C3HC4_3 zf-RING_5 RING_XB3-XBAT31 zf-ANAPC11 zf-C3HC4_4 HDA2-3 POM121 zf-Nse zf-rbx1 zf-RING_11 Prok-RING_4
Other DBs
NCBI-GeneID: 394525
NCBI-ProteinID: XP_002937382
Xenbase: XB-GENE-494079
UniProt: A0A8J0QQE9
LinkDB
Position
5:complement(122170870..122204760)
AA seq 984 aa
MSRNFMRSSSWNFLQLARYGRTANHSQFSSSNIFFHLEEDDLSGEDTSSLADSQEDFDSA
ILFGMLRGNVVGLRYYSGVVNNNEMVALQREPNNQYDRNAVKVNNVNGEQVGHIKKELAA
ALAHILDQKMAKIEGVVPYGAQNAFTMPVNLSFWGRAENKQAVLDHMMKYGFRLGPIPNS
LQLGHGSAKSKSERAGPSYRAPILPAVQMTTEQLKTEFDKLFEDLKEDDKTQELEPAETI
GTQLLSHQKQALSWMVSRENTEELPPFWEERNHLYYNTLTNFAEKQKPENVRGGILADDM
GLGKTLSVIALILTNFYDGRPFPTKKIKKQELAESDVLKSNMSQKQFKAKKTELSTDSRK
ESETLSQEASSSRPKRQKARKTKYTYSSASEEDEAWLPRKVKAPAECTLHDDDLFANALF
GLPTAVRKKKNKKGVTVSQSISKAGPEGQRRTTLIICPLSVLSNWIDQFEQHIKPEVHLN
IYIYYGPERTKDPKVLSDQDVVVTTYSVLSSDYGSRSESPLHKVKWLRVVLDEGHTIRNP
NAQQTQAVLSLEAQRRWILTGTPIQNSLKDLWSLICFLKLKPFTDREWWHRTIQRPVTTG
EDGGLCRLQALIKNITLRRTKTSKIRGRPVLDLPERKVFIQHVELSEEERQIYESLKNEG
KAVISRYVSEGTILSHYADVLAVLVRLRQLCCHPFLVSSALSSITTTADSTPGDVREKLV
QKIKLVLSSGSDEECAICLDSLNMPVITYCAHVFCKPCICQVIQHEKQEAKCPLCRGSLR
LDQLVECPQEDLDSSINKKLEQNWMCSTKINALMHALVDQRRKDATVKSIVVSQFTSFLS
VIEVALRESGFMFTRLDGSMTQKKRTEAIQSFQRPDAQSPTIMLLSLKAGGVGLNLTAAS
RVFLMDPAWNPAAEEQCFDRCHRLGQTKKVIVTKFVVRNSVEENMLKIQSKKRELAAGAF
GKKKSSSSQLKQARIEDIRTLVDL
NT seq 2955 nt   +upstreamnt  +downstreamnt
atgtcccggaactttatgagaagctctagttggaattttttgcagttggcacggtatgga
agaacagcaaaccactcgcagttttcttcttcaaatatatttttccatcttgaagaagat
gacctttcgggtgaagatacctcttcattggcagattcacaggaagattttgattctgca
atcttatttggaatgttgaggggaaatgtggttggcttgcgctattacagtggagtagtt
aataataatgaaatggttgccctccaaagggagcccaacaatcaatatgacagaaatgca
gttaaagttaataatgtcaatggagagcaagttggccacatcaagaaagaactggctgcg
gcgttggcccatatcttggaccagaaaatggcaaaaattgaaggggtggttccctacggt
gctcaaaatgcctttacaatgcctgtaaatttgagcttttggggaagagcagaaaataaa
caggcggttttagatcacatgatgaaatatggcttcagacttggccccattccaaacagc
ttacaacttggtcatggatccgcaaagtccaagtccgagagagctggacctagttatagg
gctccaattcttccagctgtgcaaatgactactgaacaattaaaaactgaatttgacaaa
ttgtttgaagatttaaaggaagatgacaaaacacaagagctagaacctgcagagaccata
ggaacacaactgctttctcaccaaaagcaagcattgtcttggatggtttcacgtgaaaac
actgaagaattgcctcctttctgggaagagagaaatcatctatattacaatactctgacc
aattttgcagaaaagcaaaagccagagaatgtcagaggagggattttggcagatgacatg
ggcctgggtaaaactctgtcagtcattgctcttatccttaccaacttttatgatggtcgg
ccatttccaactaaaaaaattaagaagcaagaactcgcagaaagtgatgtgctgaagtct
aatatgtcacaaaaacagtttaaagccaagaaaactgaactttctacagacagcagaaag
gaaagtgagactttgtcccaagaagcatccagcagtcgtcctaaaaggcagaaagccaga
aaaactaaatacacgtacagtagtgcttctgaagaggatgaagcttggcttccaagaaaa
gtaaaagctcctgccgaatgcactctccatgatgatgatctgtttgctaatgctcttttt
gggttaccaactgcagtgcggaaaaagaaaaacaaaaaaggggtcacagtttcacagtcc
atttcaaaggctggaccagaaggacaacgaagaacaacacttataatatgtccattatct
gttctaagtaactggattgatcagtttgaacagcatataaaaccagaggtgcatttgaat
atttatatttattacggtcctgaacgtacaaaagaccctaaagtcctttcagaccaagat
gttgtagtaaccacatacagtgtcctaagttctgattatggaagcaggagtgagagccct
ctgcacaaagtgaaatggctgcgagtggtgttggatgaagggcacactatacgaaatcca
aatgcacagcaaactcaagctgtacttagcctggaagcccagagaagatggatattaact
ggcactcctattcagaactctttgaaggacttgtggtctctaatatgtttcttaaaacta
aaacctttcaccgatagagagtggtggcaccggacaatccagcgacctgttaccactgga
gaagacggtggactttgccgattgcaagctttaattaaaaatataactctgaggagaacc
aaaaccagtaaaatcagaggtaggcctgtactggatctgccagagcgcaaagtgttcatc
cagcatgtggagctttcagaggaagaaaggcaaatctatgagtctctgaagaacgaaggc
aaggctgttattagcaggtatgtcagtgaaggaaccatactctcacattatgcagatgtt
ttagctgtgctggtgagactgagacagctttgctgccacccctttcttgtgtcaagtgct
ttatcttccattactactactgctgactccactccaggagatgtgcgtgagaagctcgtt
cagaagataaagctggttttgagctccggctcagatgaggaatgcgccatatgtttggat
tctttaaacatgccagttattacttactgtgctcatgtattctgcaaaccttgtatctgt
caggttatccagcatgaaaagcaagaagccaaatgccccctgtgcaggggttccttacgg
ctggatcagttggtcgagtgtccccaggaagacctagattccagtataaataagaagctg
gagcagaattggatgtgcagtactaaaataaatgccctaatgcatgccttggtggatcag
agaaggaaggatgcaacagttaaaagtattgttgtgtctcagttcacctccttcttatct
gtgattgaagtggcacttcgagagtcgggcttcatgtttacacgcttggacggctcaatg
acacagaaaaagcgaaccgaagcaattcagagcttccagaggccagacgcacagtcacca
accattatgctcctgtcactgaaagctggaggggttggtttaaacttgaccgctgcttcg
agagtgtttttaatggatcctgcatggaatcctgctgctgaagagcaatgcttcgatcgg
tgccacagactcggccagaccaagaaagtgatcgtaaccaagtttgtggtacggaattca
gtggaagaaaatatgctaaaaattcaaagcaaaaagcgagaacttgctgcgggagctttt
gggaaaaagaaatctagttccagtcagttaaaacaagcgcggattgaagacataaggact
ctggttgatttataa

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