Xenopus tropicalis (tropical clawed frog): 394564
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Entry
394564 CDS
T01011
Symbol
sec13
Name
(RefSeq) protein SEC13 homolog
KO
K14004
protein transport protein SEC13
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03013
Nucleocytoplasmic transport
xtr04141
Protein processing in endoplasmic reticulum
xtr04150
mTOR signaling pathway
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
394564 (sec13)
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
394564 (sec13)
09130 Environmental Information Processing
09132 Signal transduction
04150 mTOR signaling pathway
394564 (sec13)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xtr03019
]
394564 (sec13)
04131 Membrane trafficking [BR:
xtr04131
]
394564 (sec13)
Messenger RNA biogenesis [BR:
xtr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
394564 (sec13)
Membrane trafficking [BR:
xtr04131
]
Protein recycling
Rab GTPases and associated proteins
Rab11 associated proteins
394564 (sec13)
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Coat protein complex II (COP-II)
394564 (sec13)
Autophagy
Other autophagy associated proteins
SEACAT/GATOR2 complex
394564 (sec13)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_THOC3
Beta-prop_WDR5
WD40
WD40_Prp19
Beta-prop_WDR3_1st
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
Beta-prop_WDR3_2nd
WD40_Gbeta
Beta-prop_EIPR1
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_RIG_2nd
WDR55
ANAPC4_WD40
Beta-prop_EML
Beta-prop_Vps41
Beta-prop_WDR41
Beta-prop_WDR19_1st
Beta-prop_WDR35_TULP_N
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR36-Utp21_2nd
NBCH_WD40
Motif
Other DBs
NCBI-GeneID:
394564
NCBI-ProteinID:
NP_988967
Xenbase:
XB-GENE-944452
UniProt:
Q6P812
LinkDB
All DBs
Position
4:complement(131800349..131811714)
Genome browser
AA seq
320 aa
AA seq
DB search
MVSVINTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVKNGGQILIADLRGHEGPV
WQVAWAHPMYGNILASCSYDRKVIIWKEENGTWEKTYEYTGHDSSVNSVCWAPHDLGLVL
ACGSSDGAISILTYTGDGPWEVKKISNAHTIGCNAVSWAPSVVPGSLVDQPSSQKPNYIK
RFVSGGCDNLVKIWREEDGQWKEDQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVY
IWTSDDAATNCWNPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWACIS
DVNKGQGAVSTVTDGQLNEQ
NT seq
963 nt
NT seq
+upstream
nt +downstream
nt
atggtgtcagtaataaacaccgtggacacttcccatgaggatatgattcatgatgcccag
atggattattatggcactcgtcttgctacttgttcctctgatcgatctgtgaagatcttt
gatgtgaagaatggagggcagatcctgatagctgacctgcgcgggcacgagggtccggtt
tggcaggttgcgtgggcccaccctatgtatggaaacatcctggcctcctgctcctatgac
cgaaaagtaatcatttggaaagaagaaaatgggacctgggagaagacgtatgaatacaca
gggcatgactcctccgtaaattctgtttgctgggctccccatgacttggggctcgtgctg
gcatgtggcagttcggatggagcgatctccattctcacctatactggagatgggccctgg
gaagtgaagaagatcagcaatgcacacacaattgggtgtaacgcagtgagctgggctcct
tctgttgtccctggaagccttgtcgatcagccatcaagtcagaagcccaattacattaag
agatttgtgtctggtggatgtgataacttagtgaaaatctggagggaggaagatggccag
tggaaagaggatcagaagctggaagctcacagtgattgggtgcgggatgtggcctgggct
ccctccattggtttgcccactagcaccattgctagttgctctcaggacgggcgggtatat
atctggacaagtgatgatgctgccaccaactgttggaacccaaaacttctgcacaagttt
aatgatgtcgtttggcacgtgagctggtccatcacagctaatatcctggctgtgtctggg
ggagataacaaggtgactttatggaaggagtctgtggatggacagtgggcctgtatcagt
gatgtaaacaaggggcaaggagccgtctccaccgtgacagatggacagttgaatgagcag
tga
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integrated database retrieval system
