Xenopus tropicalis (tropical clawed frog): 394655
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Entry
394655 CDS
T01011
Symbol
prpf4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
394655 (prpf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
xtr03041
]
394655 (prpf4)
Spliceosome [BR:
xtr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
394655 (prpf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
EIF3I
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
ANAPC4_WD40
PRP4
WD40_MABP1-WDR62_1st
Beta-prop_EML
WDR90_beta-prop_4th
NBCH_WD40
Beta-prop_EIPR1
Beta-prop_DCAF4
Beta-prop_TEP1_C
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_IFT122_1st
Beta-prop_SCAP
WD40_like
Beta-prop_Vps41
Ge1_WD40
WD_LRWD1
Beta-prop_WDR19_1st
Beta-prop_WDR35_TULP_N
Beta-prop_WDR11_1st
Motif
Other DBs
NCBI-GeneID:
394655
NCBI-ProteinID:
NP_989058
Xenbase:
XB-GENE-493298
UniProt:
Q6P8A5
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Position
8:complement(2566219..2571808)
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AA seq
507 aa
AA seq
DB search
MSDDEGPPVVKRSRIFYGSLADKERERLAKGEAPMGRSAVRAGIDAGNINISGGESFDLE
EHISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAERRERLRNV
LSVVGTDALKKTKKDEEKSKKSSDEYQQTWYHEGPNTLKMARLWLAHYSLPRALTRLQAA
REQRGIPESTRTSQKQELNKSLQSLNNFCSQIGDDRPLSFCHFSPNSKMLATGCWSGLCK
LWSVPDCNLIRTLRGHNTNVGAIVFHPKATISLEEKDVNLASCAADGSVKLWNLESDEPV
ADIEGHSVRVARVTWHPSGRFLGTTCHDRSWRLWDLEAQEEILHQEGHSKGVYDIDFHTD
GSLAATGGLDAFGRVWDLRTGRCIMFLEGHLKEIYAVNFSPNGYHVATGSGDNSCKVWDL
RQRRCIYTIPAHQNLTSSVKFQPTNGNYLLTGAYDNTAKVWTHPLWAPLKTLAGHEGKVM
GVDISPDGELIATCSYDRTFKLWAAEA
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atgtcggatgatgaagggccccccgtggtgaaaaggtcgcgcatattctacggcagcctg
gccgacaaggagagggagcgtctggccaagggggaggccccgatgggcaggtcggcggta
cgggcgggcatcgatgccgggaacattaacattagcggaggggagtcgtttgacctggag
gagcacatcagcgagcggcaggccgaggtactggcggagtttgagcgcaggaagcgcgcg
cggcagatcaacgtctccaccgatgactccgaggtgaaggcgtgtctccgggccctcggg
gagcccattacgctctttggggaggggccagcggaaaggagggagcgcctgaggaacgtg
ctgtccgtggtgggcaccgacgccttgaagaaaaccaagaaagacgaagagaagagcaag
aagtcgagcgacgagtatcagcaaacctggtatcacgagggccccaatacgctgaaaatg
gctcgcctgtggctggcgcactactccctccctcgggctctgacgcggctgcaggctgcc
agggagcagcgggggatcccagaatccaccaggacttcccagaaacaggagctgaataag
tctctgcagtccctgaataatttctgcagccaaatcggagacgaccggccgctgtccttc
tgccacttcagccccaactccaagatgttggccacaggctgctggagtgggctgtgcaag
ttatggtctgtgccagactgcaacctgatccgaaccctaagaggacacaacacaaacgtg
ggcgccatagtgttccaccccaaggccacaatctcattggaggagaaggatgtgaatttg
gcttcctgcgcggccgacggctccgtcaaactctggaacctggagagtgacgagccggtg
gctgatattgagggtcactcagtgcgggtggcgcgggtaacgtggcatccgtccggcagg
ttcctgggcaccacctgccatgatcgttcctggagactgtgggacctggaagcccaggag
gaaatcctgcaccaggaggggcacagcaagggggtgtacgacatagacttccatacggac
gggtcattagctgccaccgggggtctcgatgccttcggcagagtctgggatctacgtacc
ggccgctgcattatgttcctggaggggcaccttaaggagatctacgccgtcaacttctcc
cccaatgggtaccacgttgctaccggcagcggtgacaactcgtgcaaagtgtgggacctg
cggcagcgccggtgcatctacacgatcccggcccaccagaacctcaccagctccgtcaag
tttcagcccaccaatgggaattacctgctgaccggcgcctatgacaacacggccaaagtt
tggacacaccccctgtgggcgccattaaagactctcgctgggcatgaggggaaggtcatg
ggagttgacatttcaccggacggagaattaatcgccacctgttcctacgacagaaccttc
aagctttgggcggccgaggcctaa
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integrated database retrieval system
