Xenopus tropicalis (tropical clawed frog): 394666
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Entry
394666 CDS
T01011
Symbol
spg11
Name
(RefSeq) spatacsin
KO
K19026
spatacsin
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xtr03400
]
394666 (spg11)
DNA repair and recombination proteins [BR:
xtr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
394666 (spg11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spatacsin_C
Motif
Other DBs
NCBI-GeneID:
394666
NCBI-ProteinID:
NP_989069
Xenbase:
XB-GENE-5868352
UniProt:
Q6P8D8
A0A8J0QIC3
LinkDB
All DBs
Position
3:118177436..118202121
Genome browser
AA seq
2357 aa
AA seq
DB search
MGRRILQSCKMNLNILLVPGLTLPEGTNPPVRVSLTRQKHPTLCSLCPQGELHLTALPYE
GFHTTHTQLEGLFSHFLWENADGNEEPSDNIPRLLTLSGSNEVAVHGLHVADGHLNVTTI
FLCDEDTLRKLCADNHVCVSSVICVRLLSLQGDDVLLLLSSSVLLHLHFSSEDNSLKLLS
CLCLDLGFEATERISDVCLKSGLLFMLDTYGFVYVYDTVDGSPIFTMELPLRPENAALDP
LNSICVSDDLGLFVVTTAASWALSVQLCEDAREISDHAVSAWHSDHVPDLHISGADEERL
SSCHESVCTPRCTLRSDRSWDATLSSLCNEIMNSSDTFVCSKNPYLWPCNLPLKVPLSGI
PVGEGWVRIVSEGLDDPLSLHIGSVTSFSAVLCLFGMDGLLNMIQWDMQSKEISSYPLGK
AHFVHCSQEDACLVMSDRGLSLVVFSASQEEFLTRLMIHGSASTADTLCLLNKWGRCSVP
IHTLEAGLDNRQLDTVDFFLKSKVSILNPLISEEPPDGIQAERYLQNVQDLLPALDLLVS
YIRETDQETQSKHFSEQLLQLTLGFLNGQLHLLCALLSESSPALQQAVEILMGYITKLRR
FMKKFMEQPQPVDVPGIEGQLHSWKNLSLEQIISDAILTNRIPEAQVFLRAEGHQACSLT
WLKQEGLNLVYKCLLETRLQETRQLLRNMGFSVMNELKRICLHTSDRGVRTLLVDLLQRE
GCFSDQEQEDIQTVIHLEEVYCCPQKRTKESHKLLPHRLVQRLFTGSQEPEVLQAALTPS
KNKSHMVLLYWAQGWDLETKEAILLPLRNSQVDMGFSHPRNLWCHLTLWHAWQRISSWIE
SLEKHGKTSNNDLSTWPLLTPEIVESCTLCCDYTKQKILDKLARMEIFVPSEQQNFEALV
ERMAVSRSMMPFPVSNPQCSTSENQDRHTHFVLLCAEQSLHYLLYTYLDYHRLNSQLCSA
LGNTTLHETLPWFAFLVQIRGVKDNSEDPSRMFNASLSNAHMVMPGYQPSMSSMLLEGHT
LLALATNMYAPGGIDRVLEQHGESDSGHRNVDPQLLKMALAPYPKLKAALFSTHPATVSS
PSDISLYHLLQALSPFQPTHFFTWQSVNTLAASDNSAVLPHCSSPALVSKFSVGEQLDVF
FFLRSGRPSVAFATFLVFQLLRSKTPQQLIKQVAEDVYSLALSSFHLSSVLASCCCFFEL
LGLNSHKLRVDVNVAHMILSHSASLHEDPGVHKSQAQALAHRLCRLVENEREAAMDILHS
LEEAVFSEECQNSSSLPTGSCLTIQQFCLLHSIPMSTRYLRSCAQQQDWLQLLVNTHTQE
QVLCVAEKLSPALNNHIMLSLQDANSDAQISEYDLERSENDTVTASLYNILLGCQKTGQP
GRTLLKECIKHRAPLLSVLAAYMQDTNQIACLCVWLVTSVDPANCAELTNMLSVASDHEW
DLQDLTRIWEILLERKDSQTLYKAFSIFLEDCPLLLLLELYELCLQHKYYLEAGQKIDDF
QRWMMNDDTEDTELSLLIPLPWLLQRASQLLQLLLLQTQTPYELRKVLQLLSDKAKPQLF
GGIDVHKLSDLTSILQDHPIAISKELICHYSPEALQVECQRLIQMLLDKRIFSLAQRVAE
LAELPTDSIVIEEVLQDQCLLKEVGQWENSQSRVQYWRKCHQVFSATELSPAAASDFFCS
QTLSLVAPECLLRDQTEFLAEQEMLFTLAGHWRSLSNTASIEVLEEIEQKIWKCRLAREV
LSKHGAASQLCTLPSFASLTLEFSFSSLPALNSPSLLHISNLPPLGTPSSLLDREQTKAL
SSLVDCLLDESRVHEASRVCRYFLLPHYDLWLLLNCRALATGETVRDQLHPEIQAILGEG
SERRESIWHQRKRLHSSSSLDTAMPPVPSDPVLLDLEILKDRCSHGKTYCQQLLCLYELS
QDLGCSFSDISSRDPGEILRSLLSSQRPELTDRAQAVINFHGLSPQTVAQIVAEEGVRVW
RAGPVEVYNASEIRQRFLQLVKLCQDPTLVGLTLLDYLENVPLTEQHCIIELLISAHDCF
SLTCHLEGIRRVLQACRHLTESHLAANQEYSLMVRLLSGIGRYNEMVYVFDILHKEQHFE
VLLRKQLDTKGGLQTALLEYIKRCHPGDSEKHNMTALCFSLHRDIGHNHEQAALIQLKLI
QSRAWEYWMSELVELRSALMKALTLLIDAAESYSKDSCVRQSLRCARLTRLLTLQLHLLN
NSHQTKLINLDRENLMEPILELPRFYQAVIVTEAYDIQPDWAEVLYHKVILAGDFQYLNE
FKQRELLRSGVFQQLSDKCKLQPPGATGLQNLKRVLGYCEDTYTRYKLALENQFYDVTDV
LMRDSQTRCCLTDMLSR
NT seq
7074 nt
NT seq
+upstream
nt +downstream
nt
atgggaaggagaatattacaaagctgtaagatgaatctgaacatccttctggtgccagga
ctcacactgcctgaagggaccaatccaccagtgagagtatccctgacaaggcagaagcac
cctactctctgcagtctttgccctcaaggggaacttcacctgacagcgctcccatatgaa
ggcttccacacaacccatactcagctggaaggacttttctctcatttcctgtgggaaaat
gctgatgggaatgaagaaccatctgacaacatcccccgtcttcttactctgagtgggagc
aatgaagttgctgttcatggcctgcatgttgcagacgggcacttgaatgtgaccaccatc
tttctttgcgatgaggacactttgaggaaactttgtgcagataaccatgtttgtgtgtcc
tcagtcatctgtgttcggctattgtccctacaaggagatgatgttctgctgttgctgagt
agcagtgtcttgttgcatcttcacttttcttcagaagataacagtctaaaacttttatcc
tgcttatgcttggatttgggtttcgaagcaacagagcgcatttcagatgtatgtttaaaa
agtgggctgttgtttatgctggatacttatggttttgtatatgtttatgatactgtagat
ggctcacccatcttcaccatggaacttccactaagaccagagaatgctgctttagatcca
ctcaacagtatttgtgtgtctgatgacctaggcttatttgtagtcaccactgctgcttcc
tgggctctctctgtgcaactctgtgaagatgccagagagatctcagatcacgcagtatct
gcctggcacagtgatcatgtcccagatctacatatatcaggtgcagatgaagagagactg
agtagttgtcatgaaagtgtttgtacccctagatgtaccttacgctcagacagatcttgg
gatgccacactgtcttcactatgcaatgagatcatgaactcttcagacacgtttgtgtgc
tccaagaacccttatctatggccttgtaaccttcctttaaaagtacctctcagtgggatc
cctgtgggggaaggctgggtgaggattgtttctgaagggttggatgatcctttgagtctc
cacatcgggtctgtcacttccttcagtgctgtactgtgtctttttgggatggatggctta
cttaacatgatacaatgggacatgcaatcaaaggaaatctcttcctatcccttgggaaag
gctcactttgttcactgttctcaggaagatgcttgcctggtgatgtcagatcgagggcta
tctctagtggtgttttctgcttcacaagaggaattcctgaccagattaatgattcatggc
agtgcaagtacagcagataccttatgtcttctaaataagtggggccgttgctccgttccc
attcacacactagaggctggtctagacaacagacagttagacactgttgactttttcctg
aagagcaaagtaagcatcctaaaccctttgatctctgaggagcctcccgatggcatccag
gcggaacgctatctgcaaaatgtgcaggatcttctgccagctcttgatcttcttgtctcc
tacatcagagaaacagaccaggagacacaaagcaagcacttctctgagcagttgttgcag
ctcactcttggcttcctgaatggacaacttcatctgctctgtgcgctgctatctgagtca
agtcctgcattgcagcaagctgttgagattcttatgggttatataaccaagctacgccgc
ttcatgaagaaatttatggaacagccacaacctgtggacgtcccaggtattgagggacag
ttacactcttggaagaatctgtcattggagcaaataatctctgatgccattttgacaaac
cgcattcctgaggcccaggtattcctgcgtgctgagggtcatcaagcttgcagcctgaca
tggttgaaacaagaaggccttaatctggtgtacaaatgcctgctggagacacgcctgcaa
gagactcgtcagcttctccgaaatatgggcttttctgtcatgaatgagcttaagcgcatt
tgtttgcacacatcagatcggggcgtcaggacattgctggtagatctcctgcagagagag
gggtgtttttcagaccaagagcaggaagatattcaaactgtgatccatttggaagaagtt
tactgttgtccacaaaaaaggactaaagagagtcataaacttctgcctcacaggcttgta
cagaggcttttcactggatctcaggaaccagaagtcctacaagcagctttgacaccttct
aagaacaagtcacacatggtcctcctctactgggctcagggctgggatttggaaacaaag
gaagctattttactgcccctgaggaacagtcaagtagatatgggtttctcacacccaaga
aatctgtggtgtcatcttactttatggcatgcatggcagaggatttcttcatggatagaa
tctttagaaaaacatggaaagacaagtaacaatgatctctcaacatggcctcttctgact
ccagaaatagtggagtcatgcaccctctgttgtgactatacaaagcagaagatcctggac
aagttagcaagaatggaaatatttgtcccttctgagcagcagaattttgaggcccttgtg
gaacgtatggcagttagtaggagcatgatgccgtttcctgtctccaaccctcagtgcagc
acctctgagaatcaagatcgtcacacccacttcgttttgctgtgtgctgagcagagtctt
cactacctattgtacacatatctggattatcacaggttgaattctcagctttgctctgct
ttgggcaatacaaccttgcatgaaaccttgccttggtttgcatttttggtacagatacga
ggtgtcaaagacaactctgaagatccaagccgcatgtttaatgctagcctctccaatgcc
catatggtgatgccagggtaccagcctagtatgagcagcatgctgctggagggacacaca
ttgctcgcccttgcaaccaatatgtatgcacctggtggcattgacagggtgttggagcag
catggagagtcagattctggtcatagaaatgtagaccctcagcttcttaaaatggcttta
gctccatatccgaagctcaaggcagctctcttcagtacacacccagctactgtcagttct
ccctctgacatttcactttaccatctcctacaggctctctccccatttcagcctacacac
ttcttcacatggcagtcggtaaatacccttgctgcaagtgacaacagtgcagtgctccca
cattgctcaagtccagccttggtcagcaagttctctgtgggtgagcaactagatgtcttc
ttcttcctgcggagcgggcgaccatcagtcgcattcgctacctttctggtgtttcagcta
ctaagaagcaaaaccccccaacagctaatcaagcaagttgctgaggatgtttattccctg
gcactgtcttcatttcatctctcctctgtgcttgcttcatgctgctgcttctttgagtta
ctgggtctcaacagccacaagcttcgagtggatgtgaacgttgcacacatgatactaagt
cactcagcttctctgcatgaggatccaggggtacacaaatcccaggcacaagctttagct
cacagactttgcagactggtggagaatgagagagaagcagccatggatattttacatagc
ctggaggaagctgtattttctgaagagtgtcaaaacagctcatctctacccactggctcc
tgtttaactattcagcagttctgcctcctccattctattcccatgagcactaggtatttg
aggagctgcgcacagcaacaagactggctgcagttacttgtgaacacacacactcaggaa
caggtcctatgtgtagctgaaaagttgagcccggcacttaataatcacataatgctatca
ttgcaagatgcaaattcagatgcacaaatctctgaatatgacttggaaagatctgaaaat
gatacagtgactgccagtttgtacaatatattgcttgggtgccagaagactgggcagcca
ggccgcacacttctaaaggaatgtattaagcacagagctccattgctgagtgtgcttgct
gcatatatgcaggacaccaaccaaattgcttgcctgtgtgtgtggcttgtaacctctgta
gatccggccaattgtgcagaactcacaaatatgctttcggttgcttcagatcatgagtgg
gacttgcaagatctgacacggatttgggaaatcttgctggagagaaaagatagccagact
ttgtacaaagcattcagcatctttttagaggactgtccccttcttctcttacttgaactg
tatgagctttgcctgcaacataaatactatctggaggctggacagaaaatagatgatttc
caaagatggatgatgaacgatgacactgaagatacagagttatcgcttctcattccactg
ccctggttgctacaaagagcttctcaacttctgcagctccttctcttgcagacccagact
ccatatgaattgcggaaggttttgcagcttctgagtgacaaagctaaaccacagttattt
ggcggaatagatgttcataagctgagtgatctaacctctattcttcaagaccaccctatt
gccattagcaaagaattaatatgccactatagtcctgaagccctgcaggttgagtgtcaa
aggcttatacagatgctgttggacaaaaggattttttctcttgcacaaagagtagcagaa
ctagcagaattgcccactgacagtattgtcatagaagaggtgttgcaggaccaatgtctc
ttaaaagaggttgggcagtgggagaattctcaaagccgtgtacagtactggagaaaatgc
caccaggtgtttagcgccacggagctctccccagctgcagcgtctgacttcttctgctct
cagactctttctcttgtagcgcctgaatgcttgcttagggatcagacagagtttttggca
gagcaggagatgctgtttacccttgctgggcactggaggtccctaagtaacactgcttct
atagaagtcctggaggaaattgagcagaagatttggaaatgtcgcctggcaagagaagta
ttgagtaaacatggagctgctagtcaactctgtactctgccttcatttgctagcttgacc
ctggagttttcattctcatctttgcctgcactaaactctccttcgcttcttcatatctct
aatttgccaccgcttggtactcctagcagtttgttggacagagaacagaccaaagcattg
agctctttggttgactgcctgttggatgagagccgtgtgcacgaggccagtcgggtatgc
aggtactttctgctacctcattatgatctttggctactgctgaactgcagggcactagca
acaggagagaccgtaagggaccaactgcatccggaaattcaagctatcctcggtgaaggc
agcgaacgccgggaaagcatatggcaccagaggaaaagactgcacagctcctcctctctg
gacaccgccatgccccctgtacccagtgatcctgtgctcttagatctggaaattctgaag
gacaggtgctcccatggcaaaacctactgccaacagctgctgtgtctttacgagttaagc
caggacctgggatgttccttctcagatatctcctctcgagatcccggcgagattctacgc
tctctgctttcttctcagcgtcccgagctcacagacagagcacaagcagtcatcaacttc
cacggactgtcgccgcaaacagtggcacagattgtggcagaagagggtgtgagagtctgg
cgggcagggcccgtggaagtttataatgcctctgaaataaggcagcgctttttgcagctt
gtaaaactttgccaggacccaactctggttggattaacgctacttgactatctagaaaat
gtgccactgactgagcaacactgcattattgaactcctgatttctgcccacgattgcttc
agtttaacgtgccatcttgaaggaattcgacgggtgcttcaggcatgtcgacacctaacc
gagagtcacttggcggctaaccaagaatacagccttatggttcgcctactctctgggatt
ggtcgttataatgagatggtttatgtgtttgacattctgcacaaggaacagcactttgag
gttctgctgaggaaacagctagatacaaaggggggactgcagactgctcttttggaatac
attaagcgctgccatccaggagacagcgagaagcacaacatgactgcgctctgcttcagt
ttgcaccgtgacattggccacaaccatgagcaggcagctttgatccagctcaaactcatc
cagtctagggcatgggaatactggatgtctgaattggtggagttgagatctgcactaatg
aaagcacttaccctcctaatagatgcagctgagagctactcaaaggattcctgcgtccgt
cagtctctgcgctgtgctcgccttacccgtctgttgactctgcagcttcatctgctaaac
aacagtcatcaaactaaattaatcaacctggatagagagaacttgatggagccaatactg
gaactgccacgtttctaccaggcagtcattgttacagaggcctatgatatacagccagac
tgggcagaggttttatatcacaaggtgattcttgctggagactttcagtatttaaatgaa
ttcaagcagcgagaactgctacggagtggagtgttccagcaactgtctgacaagtgtaaa
ttacagcctccaggagctaccggacttcaaaatctgaagagagtgctcggttactgcgaa
gatacctatacccgctacaaactggccttggaaaaccagttctatgatgtgaccgatgtt
ttaatgagagactcacaaacccgctgctgcctgactgacatgctgtctcggtag
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integrated database retrieval system
