Xenopus tropicalis (tropical clawed frog): 394669
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Entry
394669 CDS
T01011
Symbol
ddx39b
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03013
Nucleocytoplasmic transport
xtr03015
mRNA surveillance pathway
xtr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
394669 (ddx39b)
09122 Translation
03013 Nucleocytoplasmic transport
394669 (ddx39b)
03015 mRNA surveillance pathway
394669 (ddx39b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xtr03019
]
394669 (ddx39b)
03041 Spliceosome [BR:
xtr03041
]
394669 (ddx39b)
Enzymes [BR:
xtr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
394669 (ddx39b)
Messenger RNA biogenesis [BR:
xtr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
394669 (ddx39b)
Spliceosome [BR:
xtr03041
]
Complex C
Other components
EJC/TREX
394669 (ddx39b)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
394669 (ddx39b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
394669
NCBI-ProteinID:
NP_989072
Xenbase:
XB-GENE-478336
UniProt:
Q6P8E8
LinkDB
All DBs
Position
8:complement(74190168..74212964)
Genome browser
AA seq
428 aa
AA seq
DB search
MAETDVDNELLDYEDDEVDNQAGVDAPDITVKKEMKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPSVKVAVFFGGLAIKKDEEVLKKSCPHIVVGTPGRMLALA
RNKTLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDLLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMSQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEGDAKILNEVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcagagacagatgtagataatgaactactggactatgaagacgatgaggtggacaac
caggctggagtggatgctcctgacataactgtcaaaaaggaaatgaagggatcatatgta
tccattcatagctctggttttagagactttttgctcaagcctgagctgcttcgtgccatt
gtagattgtggctttgaacatccatcagaagtacaacatgaatgcataccccaagcaatt
cttggtatggatattttatgtcaagcaaagtctggcatgggaaaaacagcagtttttgtg
ttagccacattgcaacagctggaacctgttactgggcaggtctctgtattagtcatgtgt
cacacaagagagttggcttttcaaatcagtaaggagtatgagagattctccaaatatatg
ccttctgttaaggtggcagtattttttggggggcttgctattaagaaagatgaggaggtt
ctgaaaaagagctgtccccacattgtggtgggaacaccagggcgaatgctggcgcttgca
agaaacaagactctgaatctgaaacacatcaaacatttcatccttgatgagtgtgacaag
atgttagaacagctagacatgcgcagagatgtacaggaaattttccgcatgacaccacat
gagaagcaggttatgatgttcagtgccacactgagcaaggagattcgcccggtttgccgc
aaatttatgcaagatccaatggaaatcttcgtggatgatgaaacaaagttgacacttcat
ggactgcagcagtattacgtcaaactgaaggacaacgagaaaaatcgtaagctgttcgac
cttttggatctcttggagttcaaccaggtggtgatctttgtgaaatcagtccagcgctgc
atcgcacttgctcagctactagtggaacagaacttcccagccatagcaattcaccgtggc
atgtcacaagaggaaaggctctcacgctatcaacaatttaaggatttccagaggcgaatt
ttagttgctacaaacctgtttggccgtggaatggacattgagagggttaacattgctttc
aactatgatatgccagaggactctgatacgtacctgcacagggtggctcgagctggcaga
tttggtacaaaaggtttggctattacatttgtctctgatgagggggatgctaaaattcta
aatgaagttcaagatcgttttgaagttaacatcagtgagctgcctgatgaaattgatatc
tcctcgtacattgaacagacacggtga
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