KEGG   Xenopus tropicalis (tropical clawed frog): 394796
Entry
394796            CDS       T01011                                 
Symbol
smu1
Name
(RefSeq) WD40 repeat-containing protein SMU1
  KO
K13111  WD40 repeat-containing protein SMU1
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:xtr03041]
    394796 (smu1)
Spliceosome [BR:xtr03041]
 Complex B
  Other components
   Complex B specific factors
    394796 (smu1)
SSDB
Motif
Pfam: WD40 WD40_WDHD1_1st WD40_Prp19 Beta-prop_EML_2 WD40_CDC20-Fz Beta-prop_TEP1_2nd WDR55 WD40_MABP1-WDR62_2nd EIF3I Beta-prop_CAF1B_HIR1 ANAPC4_WD40 Beta-prop_EML LisH_TPL Beta-prop_WDR90_POC16_2nd WDR90_beta-prop_4th Beta-prop_RIG_2nd NBCH_WD40 Beta-prop_WDR75_1st WD40_MABP1-WDR62_1st Beta-prop_TEP1_C Beta-prop_Vps41 Beta-prop_Nup120_160 Ge1_WD40 Beta-prop_NWD2_C Beta-prop_HPS5 Beta-prop_SPT8 Beta-prop_DCAF4 Beta-prop_NUP159_NUP214 Beta-prop_IFT122_1st Beta-prop_IFT140_1st Beta-prop_WDR35_TULP_N Beta-prop_WDR19_1st Beta-prop_SCAP Beta-prop_WDR75_2nd Beta-prop_VPS8 WD40_RFWD3 Beta-prop_BBS7 Beta-prop_EIPR1 Beta-prop_DCAF12 Beta-prop_IP5PC_F DUF7165 TFIIIC_delta VPS8_N PROPPIN KNTC1_N Beta-prop_NOL10_N LisH LisH_PAC1 zf_topless
Other DBs
NCBI-GeneID: 394796
NCBI-ProteinID: NP_989188
Xenbase: XB-GENE-971799
UniProt: Q6P4J8
LinkDB
Position
1:94420675..94441466
AA seq 513 aa
MSIEIESSDVIRLIMQYLKENSLHRTLATLQEETTVSLNTVDSIESFVADINSGHWDTVL
QAIQSLKLPDKTLIDLYEQVVLELIELRELGAARSLLRQTDPMIMLKQNQPERYIHLENL
LARSYFDPREAYPDGSSKEKRRAAIAQALAGEVSVVPPSRLMALLGQALKWQQHQGLLPP
GMIIDLFRGKAAVKDVEEEKFPTQLSRHIKFGQKSHVECARFSPDGQYLVTGSVDGFIEV
WNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTEMLATGAQDGKIKVWKIQSGQCLR
RFERAHSKGVTCLSFSKDCSQILSASFDQTIRVHGLKSGKTLKEFRGHSSFVNEATFTQD
GHYIISASSDGTVKIWNMKTTECSNTFKSLGSTAGTDITVNSVILLPKNPEHFVVCNRSN
TVVIMNMQGQIVRSFSSGKREGGDFVCCTLSPRGEWIYCVGEDFVLYCFSTVTGKLERTL
TVHEKDVIGIAHHPHQNLIGTYSEDGLLKLWKP
NT seq 1542 nt   +upstreamnt  +downstreamnt
atgtctatcgagatcgagtcgtctgatgtcatccgtctcatcatgcagtacctgaaagaa
aacagtttgcaccgtactttagcaacgctacaagaagagaccacagtgtccttgaacact
gtggatagtattgagagctttgtggctgacatcaatagtggccattgggatactgtactt
caagctattcagtcactgaaactgccagacaagactctcatcgacctctatgaacaggtt
gtattagaactaattgaacttcgtgagctgggagctgctagatccctcctgaggcaaaca
gaccctatgataatgttaaaacagaaccaaccagaaagatacattcatcttgagaactta
ctggccagatcatattttgacccacgagaggcatacccagatggaagcagcaaggaaaaa
aggcgagctgcaatagctcaggcattggctggggaagtaagtgttgtgcctccatcgcgt
ctcatggcgttgcttggacaggcattaaaatggcagcagcatcagggtcttctgccccct
ggtatgatcattgatttgttcagaggtaaagctgctgtaaaagatgtagaagaagagaag
tttcctacacaacttagcaggcatattaagtttggacagaaatcacatgttgaatgtgct
cgattttctcctgatggccagtaccttgttactggttctgttgatggctttattgaagtc
tggaacttcaccactggaaaaatcaggaaggatctaaaataccaggctcaagacaacttt
atgatgatggatgatgctgtgttgtgcatgtgcttcagtagagatacagaaatgttggca
acaggagctcaggatggcaagataaaggtgtggaaaattcagagtggacaatgtttgagg
aggtttgaacgtgctcatagtaaaggtgtcacatgtcttagtttttccaaagactgtagt
cagatccttagtgcttcgtttgaccagactatcagggttcatggcttaaagtctggaaaa
acactaaaggaatttagaggacattcttcatttgtgaatgaagcaacatttactcaagat
ggtcactatattatcagcgcttcatccgatggcacagtaaagatatggaatatgaagacc
actgagtgctcgaatacctttaaatcgcttggaagtacagctggaacagatattactgta
aacagtgtcattcttttgcctaaaaatccagaacattttgttgtgtgtaaccgttccaac
acggtggttattatgaacatgcaaggacaaattgtaagaagctttagctctggtaagaga
gaaggtggagactttgtatgttgcaccttgtctcccagaggagagtggatctactgtgtt
ggtgaggattttgtgctttactgcttcagcactgtgacaggaaaactggagagaaccttg
actgtccacgaaaaagatgtaattggaattgctcatcacccacatcagaatttgattggt
acttatagtgaagatggactcctcaaactgtggaagccatag

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