Xenopus tropicalis (tropical clawed frog): 394804
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Entry
394804 CDS
T01011
Symbol
ddx3x
Name
(RefSeq) ATP-dependent RNA helicase DDX3X
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xtr03019
]
394804 (ddx3x)
03041 Spliceosome [BR:
xtr03041
]
394804 (ddx3x)
03036 Chromosome and associated proteins [BR:
xtr03036
]
394804 (ddx3x)
Enzymes [BR:
xtr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
394804 (ddx3x)
Messenger RNA biogenesis [BR:
xtr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
394804 (ddx3x)
mRNA cycle factors
Common to processing body (P body) and stress granule
394804 (ddx3x)
Spliceosome [BR:
xtr03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
394804 (ddx3x)
Chromosome and associated proteins [BR:
xtr03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
394804 (ddx3x)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
394804
NCBI-ProteinID:
NP_989196
Xenbase:
XB-GENE-999731
UniProt:
Q6P4J3
LinkDB
All DBs
Position
2:complement(56682594..56700561)
Genome browser
AA seq
699 aa
AA seq
DB search
MSHVAVENVLSLDQQFAGLDLNSADAQSGGSATKGRYIPPHLRNKEASRQDANWDAGRGG
NGYVNGTNDDRDSRMNGYDRSGYGNRGSGRTDRGFYDRENSGWNSGRDKDAYSSFGSRGE
RGKPSLFNDRGGSGSRRPDDRRPDGYDGMANRGDRSGFGRFDRGNSRWSDERNDEDDWSK
PLAPNDRVEQELFSGSNTGINFEKYDDIPVEATGNNCPPHIESFQDVTMGEIIMGNIQLS
RYTRPTPVQKHAIPIIIEKRDLMACAQTGSGKTAAFLLPILSQIYADGPGDAMKHLKENG
RYGRRKQFPLSLVLAPTRELAVQIYEEARKFAYRSRVRPCVVYGGADIGQQIRDLERGCH
LLVATPGRLVDMMERGKIGLDFCNYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRQT
MMFSATFPKEIQILARDFLDEYIFLAVGRVGSTSENITQKVVWVEEMDKRSFLLDLLNAT
GKDSLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT
AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEKNINITKDLLD
LLVEAKQEVPSWLENMAYEQHHKSSTRGRSKSRFSGGFGARDYRQSSGASSGFGGSSRGG
RSSGHGGSRGFGGGYGGFYNSDGYGGNYGGSSQVDWWGN
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggccgtggaaaatgtcctcagtctagaccagcagtttgctggcctagat
ttgaattcagctgatgcccaaagtggtggttctgcaacaaaaggacgttatatccctcca
catttgagaaacaaagaagcctcaaggcaagacgccaactgggacgctggccgtggcggg
aatggctacgttaatggtacaaacgatgaccgtgacagtcgcatgaatggttatgatcga
agtggctatggaaatcgtggttctggacgaactgacagaggcttttatgatagagagaat
tctgggtggaattcaggcagagacaaagatgcatatagcagttttggctcccgtggtgag
cgaggaaaaccaagcttatttaatgatagaggaggaagtggatccagaagaccggatgac
cgtcgaccagacggctatgatggaatggctaacagaggtgatagaagtggctttggtaga
tttgacagaggcaacagccgttggtcagatgaaagaaatgatgaggatgactggtcaaaa
cctttagctccaaatgaccgtgtagaacaggaacttttctctgggagcaacactggcatt
aattttgagaagtatgatgacattccagttgaagcaacaggcaacaattgccccccgcat
atagaaagttttcaagatgttactatgggtgaaattatcatgggaaacattcagctaagc
cgttacacacgaccaactccagtgcagaaacatgcaattccaattattattgagaagaga
gacttgatggcatgtgctcagacaggatctgggaaaactgcagcctttcttctacccata
ttaagtcagatctatgccgatgggcctggtgatgcaatgaagcacttaaaggaaaatgga
agatatggtagacgcaaacagtttccactttctcttgttttggcacctaccagagagcta
gcagtacaaatctatgaagaggctagaaagtttgcatacaggtctagagttcgcccatgt
gtagtctatggtggggctgatattggccagcagatacgagatctggaacgtggttgtcat
ctacttgttgctactcctgggcgccttgttgatatgatggaaaggggaaagattggcttg
gacttttgcaattatctagtactagatgaagcagacagaatgcttgacatgggttttgag
cctcaaattcgtcgtattgtcgaacaagacactatgccaccaaaaggtgtaaggcagact
atgatgtttagcgccactttccccaaagagattcagatacttgctcgggattttttggat
gaatatatcttcttggcagttggtagagttggttccacttcagaaaatataactcaaaaa
gttgtttgggtcgaggagatggacaaacgttcatttttgcttgacctcctcaatgcaaca
ggaaaagattccttaactctagtctttgtggagaccaaaaagggtgcagatgcacttgaa
gatttcttgtatcatgagggttatgcctgtacaagcatccatggagacaggtctcagaga
gacagagaagaagcacttcaccagttccggtcaggaaaaagcccaatccttgttgccact
gctgtagcagctagaggtcttgacatttcaaatgtaaagcatgtcataaactttgatcta
ccaagtgacattgaagaatatgtgcatcgtattggtcgtactggacgtgtagggaatctt
ggtcttgcaacatcttttttcaatgaaaagaacataaacataacaaaagatttgctggat
ctgctggtggaagccaaacaggaggttccttcttggttggagaacatggcttatgaacag
catcacaagagtagcactcgtggtcgttcaaagagtcgcttcagtggtggatttggtgct
agagactatcgtcaaagtagcggtgcaagtagcggctttggcggcagcagccgcggcggc
cgaagcagtggtcatggaggcagccgggggtttggaggcggctatggtggcttctataac
agtgacgggtatggaggcaactacgggggcagctcccaggttgactggtggggcaactaa
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