Xenopus tropicalis (tropical clawed frog): 394837
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Entry
394837 CDS
T01011
Symbol
ddx5
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
394837 (ddx5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
xtr03041
]
394837 (ddx5)
03009 Ribosome biogenesis [BR:
xtr03009
]
394837 (ddx5)
Enzymes [BR:
xtr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
394837 (ddx5)
Spliceosome [BR:
xtr03041
]
Complex A
U1 snRNP components
U1 related factors
394837 (ddx5)
Complex B
394837 (ddx5)
Ribosome biogenesis [BR:
xtr03009
]
Eukaryotic type
Pre-60S particles
Helicases
394837 (ddx5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
P68HR
ResIII
Helicase_C_2
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
394837
NCBI-ProteinID:
NP_989229
Xenbase:
XB-GENE-1009995
UniProt:
Q6P4W2
LinkDB
All DBs
Position
10:51534563..51542822
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AA seq
609 aa
AA seq
DB search
MPGFNDRDRARDRGFGGGPRFGGNRGGTSGKYGNPGERLMKKKWNLDELPKFEKNFYQEH
PDVVRRTPQECDQYRRSKEITVRGLNCPKPVLQFHEASFPANLMEVVKRQNFTDPTPIQG
QGWPVALSGLDMVGVAMTGSGKTLSYLLPGIVHINHQPFLQRGDGPILLVLAPTRELAQQ
VQQVAAEYGRACRLRSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKTNLNRC
TYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYVHINI
GALELSANHNILQIVDVCNDGEKDEKLVRLMEEIMSEKENKTIVFVETKRRCDDLTRRLR
RDGWPAMGIHGDKSQQERDWVLNEFKHGKSPILIATDVASRGLDVEDVKFVINYDYPNSS
EDYIHRIGRTARSSKTGTAYTFFTPGNIKQVNDLISVLREANQAINPKLLQLVEDRGRFR
GRGGMNDRRDRFSSGKRGGWDRENYDRGFGGKRDFGNKSQNGFGNKSQNGFGAQNYNGNS
FNSYGTNVQSGFRAGAQNGTYQNGYASQQNGYSAPPMQNSMAQQAYTYPAATATAPAVMG
YPMPTSYPQ
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgcccggattcaacgacagggaccgcgcccgggacaggggatttggaggtggtcctcgc
tttgggggaaacagaggtggtacatctggcaaatatggaaaccctggggagcggcttatg
aagaagaaatggaacctggatgaactgcccaaatttgagaagaatttctatcaagaacat
ccagatgttgtgagacggacaccgcaagaatgtgaccaatacagaagaagcaaagagatc
accgtacgagggcttaactgtccaaagccagttttgcagttccatgaagcaagtttccca
gccaatctcatggaagtggttaaacggcagaacttcactgaccccactcctattcaaggg
cagggatggccagtggctctgagtgggctggatatggttggtgttgcaatgactggatcc
ggaaagaccctttcttatctacttcctgggattgtccacatcaaccatcaaccattccta
cagcgaggagatggtccaattcttttggtgctggcaccaaccagggaattggctcaacag
gttcaacaagtggcagctgagtatgggagagcttgtcgtttgaggtccacctgtatttat
gggggagctccaaagggaccacagatacgtgatctagaaagaggagttgaaatctgcatt
gctacacccggaaggctgatagatttccttgaagcaggaaagaccaatctgaacagatgc
acatatctagtgctggatgaagctgaccggatgcttgacatgggctttgagcctcagatc
agaaagatagtggatcaaattcgacctgacagacagacgctgatgtggagtgccacttgg
cccaaagaagtcaggcaacttgctgaagacttcctcagagattatgttcatattaacatt
ggtgccctggagctcagtgccaaccacaatatccttcagattgttgatgtgtgtaatgat
ggggagaaggatgaaaagcttgttcgtttgatggaggaaattatgagtgaaaaagaaaat
aagaccatagtgtttgttgagaccaagaggcgatgtgatgacttgactcgcaggttgagg
agggatgggtggcctgcaatgggaatccatggtgataagagccagcaggaacgtgactgg
gtcttaaatgagttcaaacacggtaaatcgcctatcctgattgccacagacgttgcttcc
agaggtctagatgtggaagatgtgaaatttgtcatcaattatgactacccgaactcctca
gaggattatatccaccgaattggaagaactgcccgcagcagcaaaactggcaccgcatac
actttctttaccccaggaaatattaagcaagttaatgacctgatctccgtcctccgagaa
gcaaaccaagccatcaaccccaagctgctgcagctggtggaggacagaggacgcttcaga
ggcagaggaggcatgaacgaccgacgtgaccgtttctcttcaggcaagcggggtgggtgg
gaccgggaaaactatgaccgtgggtttggcggcaagagagactttggcaacaaatcccaa
aatggcttcggcaacaaatcccaaaatggctttggggcacagaattacaatggaaactcc
tttaacagctacggcaccaatgttcagagtgggttccgggcaggagcacagaacggcaca
taccagaatggctacgccagccagcagaatggctacagtgcacctccaatgcagaacagc
atggcccaacaggcatacacatacccagctgccactgctacagcaccagctgtcatgggt
taccccatgccaacgtcctacccccaataa
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