Xenopus tropicalis (tropical clawed frog): 394845
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Entry
394845 CDS
T01011
Symbol
col18a1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
xtr04147
]
394845 (col18a1)
00535 Proteoglycans [BR:
xtr00535
]
394845 (col18a1)
00536 Glycosaminoglycan binding proteins [BR:
xtr00536
]
394845 (col18a1)
Exosome [BR:
xtr04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
394845 (col18a1)
Proteoglycans [BR:
xtr00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
394845 (col18a1)
Glycosaminoglycan binding proteins [BR:
xtr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
394845 (col18a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF959
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
394845
NCBI-ProteinID:
XP_012826357
Xenbase:
XB-GENE-941368
UniProt:
A0A6I8S0F8
LinkDB
All DBs
Position
9:complement(61517942..61620987)
Genome browser
AA seq
1597 aa
AA seq
DB search
MAPARLSLGVTVLVLLLPALSNGQFWSWFTGSKETTASPTTQRVTPGTSSVHSTAVQHHS
PDASPTTLHHIPDALPSAESTSAPAVHQPPEEDNLPETTPSHLEAASVPSSEKPTPFTEQ
SPTASFSAILIPSTVILTTEGKNDSTETAGVTRPLQTTESPTTSRRQEEKQIWNIFSVQK
GKENVAPGTLATTPVAKDETSAPSVSEVPISQKPQSEQNIAGVGAEILNVAEGIRNFVHG
WEDNIANSTKQTPTPDTEMVTVTTAPSLTVNDTGTLSYNKTEPSENTMANHTEGPVSEPH
KLISSHNKPLLPDNFNPEVGLLQLIGEPVPEQITKVFGPDKTPAYVFGKEANTGQVAQYH
LPNPMYRDFSLLFHVQPTTDKAGILFAITDASQSIVYIGVKLSEVKDGKQDIIFYYTEPG
SQDSYVAATFNVPSLVNRWSRFAISVEEEEVVLFMDCDELERVRFERSPDEMELEDGSGL
FVAQAGGADPDRYQGVIADLKIVADPRAAEHQCEEDGDDSDGISGDFGSGIADNDLVTSP
PVIIKVQPPITVPPIQRTPVEKEIVQTGQGQQGVKGEKGDRGEKGERGLTGPKGDGGNAS
PTSDSKGEKGQKGEVGVKGSAGFGYPGPKGQKGDPGDLGPRGPPGPPGPSILQKSDGTTV
QQVTGPPGPQGPAGPPGKEGEPGDPGEDGKTGEVGPQGFPGTPGDSGQKGDKGDSGVGIR
GAPGPPGPPGPPGPSRTDKLTFIDMEGSGYGGDSEHIRGAPGVPGPPGPPGVPGLPGVPG
TFGMNNTGLPGPPGLPGLPGKEGIPGPPGPPGLPGKDGLSGTPGAAGLRGEDGEIGLPGA
PGTKGSTGEPGLPGPPGQSGLAGLPGPMGPRGLPGPPGPPGPVGHGSAIGFDDMEASGLG
FGLREGTQGVPGLPGAKGEPGHPGLPGVKGDSGFPGLEGRPGLDGFPGPEGLKGEKGERG
ERGESGRDGVGIPGPPGPPGQVLYLPSDDKTIVGAIPGPEGRQGVAGLPGPRGPKGEAGL
NGIPGTFGVKGEKGEPGIIMGPDSTIYTDLSKGEKGDEGPRGPAGAAGPFGQKGEIGFPG
RPGRPGMNGLKGEKGEPSGASGGFGLRGPPGPPGPPGPPGSVVYGDPNNPGAQVYPGHKG
ERGFPGPKGDVGPAGPPGSFPYDLSTFASILRREAGLKGEKGESGGGSHGQGIPGPPGNP
GYPGLPGAKGDSVQGPPGPAGPPGPSGIGYEGRQGPPGPPGPPGLPGSSSYPGPHRQTIS
IPGPPGPPGPPGLPGTSGGLSGATVLQTYQTMINLAHRLQEGTIVLVQERSELYVRVREG
FRKILLGEYTTSSGPGQDNEVAAEQAPVVPYPHRNKDSDYLQSTEENSNNPNVPSGARPW
SDPRLPEPPRVNPPPPPDHHHHGNPRPLEPSPVHTHQEFNPVLHLVALNTPLSGSMKSIR
GVDFQCFEQARKAGLHGTFRAFLSSRLQDLYSIVRRADRQSVQIVNLRDEVLFDNWESLF
SGSEAQMRPGASIFSFDGKDVATDPTWPQKMVWHGSDSKGRRLTESYCETWRTDEGAVTG
QASSLTSGKLLEQRPQSCNKNFIVLCIENSFMTNNRK
NT seq
4794 nt
NT seq
+upstream
nt +downstream
nt
atggctccagcgcggcttagccttggggtcacagtgcttgtgctcctcttacctgctcta
tccaatggccagttttggtcctggtttacagggagcaaagagacaactgcgagccccaca
actcaacgtgtaactccaggaacatcctcagttcatagtactgctgtgcagcatcactca
cctgatgcctcgccaaccacattgcaccatataccggatgcactaccctcagcggaaagt
acgtcagcacctgcagtgcatcagccacctgaagaagataacctgcctgagacaacaccc
tctcacctagaggcagcctctgtgccatcttcagaaaaacccacaccttttacagaacag
tcacccacagcatccttctcagccatactcattcccagcacagtcatcctaaccacagag
ggcaagaatgacagtactgagacagcaggagtgaccagacccctccaaacgacagagtcc
cctactacttccaggaggcaggaggaaaagcaaatatggaacatattcagtgtgcagaaa
ggaaaggagaacgtagcgcctgggactttggccacaacacctgtagcgaaggatgaaacc
agtgcaccttctgtgtcagaggttccaatatctcagaagccacaaagtgaacaaaacatt
gctggtgtaggggccgagatcttaaatgtagcagaaggaattaggaactttgtgcatggc
tgggaagataacattgccaacagcacaaagcagactcctactcctgacacggagatggtg
actgtcacaacagccccaagccttactgtaaatgacactggcaccttaagctacaacaag
acagaaccaagcgagaacactatggcaaaccatacggaaggtccggtgtccgagccccat
aaactgatctcatcccacaacaagccacttctaccagacaacttcaacccagaagttggc
ctcttgcagttgattggagaacctgtacctgaacagatcaccaaggtctttgggcccgac
aagactcccgcctatgtatttggtaaagaagccaatacaggccaggtggcccaataccat
ctgcccaaccctatgtatagggacttctctctcctcttccatgtccagccaaccacagac
aaggccggcatcctctttgccatcacagatgcctctcagtctattgtgtatatcggggtg
aagctttctgaagtcaaggatgggaagcaagacatcatcttctactatacagagcctggc
tcacaggattcctatgtagctgccaccttcaatgtcccatcactggtgaatcgttggtct
cgctttgcaatcagtgtggaggaagaagaagttgtgctgtttatggattgtgatgagctg
gaaagggtgcgcttcgagagatcacctgatgagatggaactagaagatggctctgggctc
tttgttgctcaagcaggtggcgctgatccagacagatatcagggtgtaatagcagatcta
aagatcgtagccgatccaagagccgcagaacatcagtgtgaggaggatggagatgactct
gatgggatctctggagattttggcagtggcattgcggacaatgatttggtgacttctcct
cctgtgataatcaaagtgcagcctcctataactgtccctcccatacagaggacccctgtg
gagaaagagattgttcagacaggtcaaggccagcaaggggtaaaaggagagaagggtgat
cgtggagagaagggtgagaggggactgactggccctaagggagacggtgggaatgcaagt
ccaacttctgattccaaaggagaaaagggtcagaaaggagaggtcggagtgaagggaagt
gcaggctttggctatcccgggcctaaagggcagaaaggagatcctggagacttgggacca
agaggaccaccaggcccacctggaccatctatattacagaaaagtgatggaactacagtg
caacaggtcacaggacctccaggtcctcaaggccctgcgggaccaccaggaaaagaaggg
gaaccaggtgaccctggtgaagatggaaaaactggcgaggttggtccccaaggatttcca
gggaccccaggagattctgggcagaagggagacaagggtgattctggtgttggtatcaga
ggtgctcctgggccaccaggtccgccaggcccccctggaccttctagaaccgacaagctg
acattcattgacatggaaggttctggatatggtggagattcggagcacatcaggggagcc
cctggtgtgcctgggcccccaggtcctccaggtgtaccagggttacccggagtacccgga
acttttggcatgaacaacacaggattgccaggtccacctggattgccaggtcttcccgga
aaggaaggaattccaggtcctcctggccccccaggactccctggaaaagacgggttgtct
ggtacacctggtgctgctggattacggggtgaagatggagagattggtcttccaggtgct
cctggaacaaagggtagcactggtgagccaggactacctggacctcctggacaatctggt
ttagctggacttcctggaccaatgggaccacgcgggctgccaggtcctccaggaccacct
gggcctgtgggtcatggatctgcaattggctttgatgacatggaagcctcagggcttgga
tttggcttgagagaagggacacagggggtgcctggacttcccggggcaaagggagagcca
ggacatccagggctgccaggagtgaagggagatagtggttttccaggccttgaaggaagg
ccggggttggatggattcccaggtccagagggattaaagggtgagaaaggtgaacgtggt
gagcggggagaatctggccgtgatggtgttggtattccaggtccaccgggacctcctggt
caggtgctttatttaccatccgatgacaagactattgttggtgccattcctggaccagag
ggcaggcaaggtgtagctggacttccgggcccaaggggacccaaaggagaggcgggcttg
aacggtatcccaggaacctttggagtaaagggagaaaagggagagcctggaattattatg
ggaccagatagcaccatttacactgatctatctaaaggagagaagggtgacgaaggacca
aggggaccagcaggagctgcgggaccatttggacaaaagggagaaatcgggttcccagga
cgccctggacgtcctggtatgaatggactgaaaggggagaaaggagaacctagtggtgca
agtggtggctttggactgagggggccacctggtcctcctggcccacccggtcctcctggc
agtgtggtgtatggagatccaaataacccaggagcccaagtatatccaggtcataaaggg
gagagaggatttcctggacccaaaggtgatgttggtcctgctggcccaccaggctctttc
ccatatgatttaagtacctttgcctcgattttaaggagagaagctggactcaaaggagag
aagggcgaatctgggggtggttcccatggacaggggatcccagggccacctggaaaccct
ggatatccaggactgccgggagctaaaggagacagtgttcaaggtcctccaggcccagcc
ggcccaccaggaccttctggaatcggttatgaaggaaggcaaggtccaccagggccccca
ggtcctccaggcctgccaggttcctcctcttatcctgggcctcacaggcaaaccatcagc
atacctggacctcctggcccaccaggcccaccagggctcccaggaacatcaggaggatta
tctggggctactgtgctacagacctatcagactatgatcaacttagcccacaggctgcag
gaagggacaattgtgctggtccaggagaggtcggaactgtatgtgcgtgtgagagaaggc
ttccgaaaaattcttcttggtgaatatacaacatcctctggccctggacaggataatgaa
gttgctgcggagcaggcccctgtagttccatatccacaccgtaacaaagattctgattac
ctccagtctacagaggagaacagcaacaatccaaatgtgccctcaggtgcccgaccctgg
agcgatcctcggttaccagaaccaccaagagtaaacccaccaccacccccagaccatcac
caccatggaaaccctcgtccattggaaccatccccagtgcacacacaccaagagtttaat
cctgtgcttcaccttgtggccctgaacactccactgagtggcagcatgaaatccatccgc
ggagtggacttccagtgctttgagcaagcccgtaaagctggactacatggcacatttaga
gcgtttttgtcttcccgacttcaagacctgtacagcattgtacgcagagctgatcgacaa
tctgtgcaaattgttaatcttagggatgaagtgttatttgacaactgggagtccctgttc
tctggttctgaggctcagatgaggcctggtgcgagtatcttctcttttgatggaaaagat
gttgcaacagatcctacatggccacagaagatggtttggcatgggtctgactcgaaggga
cggcggcttactgaaagctattgcgagacctggcgcacagatgaaggtgcagtaactggt
caggcatcatcgctgacgagcgggaaactcttagaacagcgcccacagagttgcaacaag
aacttcattgttttgtgtattgagaacagcttcatgaccaataaccggaagtag
DBGET
integrated database retrieval system
