Xenopus tropicalis (tropical clawed frog): 394870
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Entry
394870 CDS
T01011
Symbol
smg7
Name
(RefSeq) protein SMG7
KO
K14409
protein SMG7
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
394870 (smg7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xtr03019
]
394870 (smg7)
Messenger RNA biogenesis [BR:
xtr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
394870 (smg7)
mRNA cycle factors
Common to processing body (P body) and stress granule
394870 (smg7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
TPR_2
Motif
Other DBs
NCBI-GeneID:
394870
NCBI-ProteinID:
NP_989258
Xenbase:
XB-GENE-955255
UniProt:
A0A803KGU7
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All DBs
Position
4:complement(99938070..99967464)
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AA seq
1142 aa
AA seq
DB search
MSLLCAQYLRQAEVLKADMTESKPGTAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDL
WNHAFKNQITTLQGQAKNRTNPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCR
VKSSQLGIISNKQMHSGTVVKPQSSSCAYICQHCLVHLGDIARYRNQTSQAESYYRHAAQ
LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESREEV
KNRWGVSDFIKAFIKFHGHVYLTKSLEKVSTLREQLEEQFKNLLFQKALNSQQLVHITVI
NLFQLHHLRSFGTEADQQSFSPEEELCWSQLLALFMSFLGILCRFPLKTHHCEETSCANP
LPAIKVSLDWMKLRPSVFQENTVEEKKYVWPWLISLLNSFHVLDEDVSSANMLPLPEEFE
LQGFLALRPAFRNLDFSRGHQAITGVRDAQHRQLRPLRLAAVGKWISENQPQLIQYRTVE
GELLFFTDIPELLTEDIDETEDRSSPQEFNQTDTHKAEGSPGLKSVLSTGRSLSCDTNEK
PVVTFKENIKPQELNRDVPSRSYTRSGNVAKDQRDYNKSLNNAVNKKDNNNKRKNELKKM
CVEKTAEPGKQSIAVQVKSQTELRKTPVSEARKTAVTPTSSPSSSTQFIPIHHPGAFPPL
PSRPGFPPPAYVIPPPVAFSMSSGYSFPAGVNVPGSFLQPSSHSPSGNQGPPGKQSHIPY
SQQRPSGPVTPNQGNLGNQITGQIQPQAPSNSPTQSSSQTAAQLQIQALAQQQSPTKPIQ
SIPKHHTSLQQYQQAETSKQVWSTSQVPNALGKMVPMKQSYYMDGRLPTEPVNMLEQCLQ
QQQPLENKMTSFPMEAYGQSPSDVKMPEFYWSEPPSYNLNDNRALLAQQSVNNQRSKRQP
TGYRSAQEPMTRMPFESLLEKPSELISQPPSFLSLSGFSLSQERFPNNSMFNEVYGKSTC
TSIKPEACQVMGQQETSLYSLFEGKPWSPSLPASSDHSTPASQSPHSSNPSSLPSSPPTH
NHTSQPFSNFGPIGTPDNRDRRGTDRWKAEKPVSAMGSFGLDYLSVTPSSENSWRQANNS
SSANAWAAQGNAREDSSAALMESLKSIWSTTMMHPGPSALEQLLMQQKEKQQRGQGSLNP
PH
NT seq
3429 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgctgtgtgcgcagtatctcaggcaggctgaagtcctgaaagcagatatgaca
gaatctaagcctggcacagcagaggtgtggacttcccgtcaggctctacaagatttgtac
cagaagatgctggtgacagaccttgagtatgcactggacaagaaggtggaacaggatctc
tggaatcatgccttcaaaaatcagataacaacgttgcaagggcaagccaagaaccgaact
aatccaaatcgcagtgaggtacaggccaatttgtcactgttccttgaggcagctagtggc
ttctatacacagcttttgcaggagctttgcactgtgtttaatgtggatctgccatgtcgt
gtgaagtcctcccagctgggcattataagcaataagcagatgcactctgggacagttgtg
aagcctcagtccagttcctgcgcctatatctgtcagcattgcttggttcatcttggagac
attgctcgctataggaaccagacaagccaggctgaatcctattatagacatgctgctcaa
cttgtcccttccaatggtcagccatataatcagctggctattcttgcctcttcaaaaggg
gaccatttgaccactattttctactactgccgcagcatcgctgtcaagtttccttttcca
gcagcctccaccaatttgcagaaggccctttccaaagccttggagagtcgcgaagaggtg
aagaatcgctggggagtatcagactttataaaagcctttataaagttccatggacatgtg
tacttaacaaaaagtttagagaaagtaagcactctgcgggaacagctggaagaacaattc
aagaacttactttttcagaaagcgcttaactcccagcagctggttcatatcacagtgata
aacctgtttcagctacaccatctgcgaagctttggcactgaggcagaccaacagagtttt
agccctgaagaggagctatgctggtcacaactcttggctctctttatgtcgttcttgggc
atcctctgccggtttcccttaaagacccatcactgtgaggaaacctcctgtgccaaccca
ctacccgctatcaaggtatcattagactggatgaagctgcgccccagtgtcttccaagag
aacaccgttgaggaaaaaaaatatgtatggccatggctcatttctcttctgaacagtttc
catgtgcttgatgaagatgtctctagtgctaacatgcttcctctcccagaggagtttgag
ctgcaaggattcttggcacttcgacctgcttttagaaacctagatttctctagaggacac
caagccatcactggagttagagatgcccagcaccggcagctaagaccgctacgacttgcg
gctgttggaaaatggatctctgagaatcagcctcagttgattcagtatcgtactgttgag
ggtgagctattgttctttactgacatacctgagcttttgactgaagacattgatgagaca
gaggacagatcttccccacaagagttcaaccagacagacactcataaagctgaaggcagc
cctggtttaaaatctgtattatccactggccgaagcctgagctgtgacacaaacgaaaag
ccagtggtgacttttaaagagaacataaagccacaagagttaaaccgggatgtaccatca
cgcagctacaccagatcaggaaatgttgccaaggatcagagagactataacaaaagttta
aataatgctgtcaacaaaaaggacaataataataaaagaaagaatgaacttaagaaaatg
tgtgttgagaagactgctgaacccgggaagcaaagcattgcagttcaggtgaaatctcaa
acagagttgagaaaaactccagtctctgaagccagaaaaacagcagtgactccaacatcc
agtccaagcagtagcacacagttcatccctatacatcatcctggtgcttttccccctcta
cccagccgaccaggttttcccccacctgcatatgttataccaccacctgtggcgttttcc
atgagctctggctattcctttcctgctggcgttaatgtcccagggtctttcctgcagcct
tcatctcattcaccatctggaaaccagggtcctcctgggaaacagtcccacattccttac
agtcaacagcgcccctctggtccagtgactcctaaccagggtaatcttggcaaccagata
actggccagatccaaccacaggccccatccaattcaccgacccagtccagtagtcagact
gcagcacaactacagatccaagcacttgctcagcagcagtctccaactaaacctatacaa
tccattcccaagcatcacacatctctccagcagtaccaacaggcagaaacatcaaaacag
gtctggagtacttctcaggttcccaacgcattgggaaagatggtacccatgaaacaatcg
tattatatggatggccgtttgccaacagaacctgtaaatatgctggagcagtgtctacag
cagcagcagcctctggagaataagatgacctcttttcccatggaagcctatggccagagc
ccttctgatgttaagatgccagaattctactggagtgaaccaccatcctacaacttaaat
gacaacagggctctcttggcacagcaatctgtaaataaccaaaggagcaaacgccagccc
acaggctaccgatctgcccaagagccaatgactagaatgccgtttgagtctctcctggaa
aagccatctgaactgatatcccagcccccttctttcctctcactctctggattttcacta
agccaggaacggttcccgaataacagcatgtttaatgaggtgtatggaaaatccacctgc
acgagcataaagcccgaggcatgccaagtcatgggacaacaggagacctccctgtactct
ctttttgagggtaaaccatggtctccatcacttccagcaagctcagatcattctacgcca
gccagccagtcacctcattcttcaaatccaagcagcctacccagctctcctcccacccac
aatcatacctcgcagcccttctctaactttggtcctatcggcactccagataaccgagat
cgtcggggaactgaccgctggaaggctgaaaagccagtttcagcaatgggtagctttggg
ctggactacttatctgtgactccatcttctgagaatagctggcgccaggctaataattca
agtagtgctaatgcttgggctgctcaaggtaatgcccgagaggactcttcagctgctctt
atggaaagtttaaagtccatttggtcaaccacaatgatgcatcctggaccttctgccttg
gaacagcttctgatgcagcagaaggagaagcagcagcgagggcagggatcactgaaccct
ccgcactga
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integrated database retrieval system
