Xenopus tropicalis (tropical clawed frog): 394872
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Entry
394872 CDS
T01011
Symbol
sympk
Name
(RefSeq) symplekin
KO
K06100
symplekin
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03015
mRNA surveillance pathway
xtr04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
394872 (sympk)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
394872 (sympk)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xtr03021
]
394872 (sympk)
03019 Messenger RNA biogenesis [BR:
xtr03019
]
394872 (sympk)
Transcription machinery [BR:
xtr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
394872 (sympk)
Messenger RNA biogenesis [BR:
xtr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
394872 (sympk)
U7-dependent histone pre-mRNA processing factors
394872 (sympk)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
TOR1L1_N
Cohesin_HEAT
Motif
Other DBs
NCBI-GeneID:
394872
NCBI-ProteinID:
NP_989259
Xenbase:
XB-GENE-941660
UniProt:
A0A8J0QIY6
Q6P3Q8
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All DBs
Position
8:70982113..71000003
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AA seq
1203 aa
AA seq
DB search
MAVSMASQFFSQEEGTSEVVSTSERVVELLNMAALATNDSKITMLKQVQELIINKDPTLL
DNFLDEIIAFQADKSVEVRKFVVNFIEEACKLDNELLIKLIANLHMLLKDENVNVVKKSI
LTMTQLYKVALQWVARSRPPSEQQESCWDLVTEMAADILLLLESDNDGIRTHAVKFVESL
IVTLSPRTPDSEVPKRQEGDISLEQIPSDHAFLKYNTLRDVGKQAVKELLKFMAHPAISS
INLTAALGSLASIARQRPMFMAEVIQAYETLHANLPPTLAKSQVSSVRKNLKLQLLSVLR
HPSSYEYQGPISTLLLDLGTSQGEITRHLPPPRDSNRKRAREDGEGGQKKSRTDIPLPDD
DDDKDTIQLPTIPAPAPSTQSATDITAEFLRPLLSPENVANLVLISMVYLPDSMPASFQA
TYTPVESAGTDAQIRHLARLMATQMTSVGIGPGVEQTKDVPVDVVEEENTKPEGLVIKRR
ISALTKGQAISVLGCQSEKAKEEEEEEEDAPLAKKRPEPILPATQIRPSGVGGRKKVFRL
KEVTEPLTEVQMKSLKLGAVQRILQAERTVGSSGASQMRVKVLARLVTQLDISVKAEVLS
HFLSDPRMRLDLALAWLYQEYCEYQSGAGEEAYQECLIGILTGLQERPDQRDGVFTKVVL
EAPLLTDSALDVLRKYCEDEGRSYLGMSTLRDLILTRPARQFQYLHLLLDLSSHEKDKIR
QQSLHFIKRMYEKESLRPYIEKFALNYLQLLVHPNPPSVLFGADKDTEVAAPWTEDTVKQ
CLYLYLALLPQNHKLIHELASVYTEATADIKRTVLRVIETPIRGMGMNSPELLLLVENCP
KGAETLVTRCLHILTDKVPPSPELVKRVRELYHKRLPDVRFLIPVLNGLDKKEVIQALPK
LIKLNPIVVKEVFNRLLGTQHGEVSSSMSPLTPGDLLVALHNIDSSKCDMKSVIKATNLC
FSARSVYTSEVLAVVLQQLMDTTPLPMLLMRTVIQALGMYPRLGGFIMNILTRLIYKQVW
KYPKVWEGFIKCCQRTKPQSFSVLLQLPPPQLLSVLQTSPDLRDPLLVHVRAFTPHQLAH
VPHSIMAILEAESRTDTGAEESAQVEEEQDTPAQDIIARRLAQEKSLKKQIEEQKGRNNQ
EMEEVAEVDPPAIFIAEEEEEEDSMKSQGKEVPQEDSSSNATTAEKSPVADEPMEEDPVE
KKD
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
atggcagtcagtatggcatcccagttcttctcccaagaggaggggacatcagaagttgta
tccacatctgagagggttgtggaattattgaatatggctgctcttgctacaaatgattcc
aaaattaccatgcttaaacaggttcaagaactcataataaacaaggaccccactttgctg
gacaactttcttgatgaaataattgcttttcaagcagacaaatctgtagaagtccgaaaa
tttgtggtaaatttcatagaagaagcttgtaaactggacaatgagcttctgattaaatta
atcgccaaccttcatatgctactgaaggatgagaatgtcaatgtggtgaagaagtccatt
ttgaccatgacccagctgtataaagtggcccttcagtgggttgctcgctcccgccctcca
tctgagcaacaagaatcctgctgggaccttgtaactgagatggctgcagacatcctcctc
ttgttggaatcggataatgatggcatccgcactcatgcagtaaagtttgtagaaagtttg
attgtcaccttgtctcctcgtacccctgacagtgaagttccaaaaagacaagaaggggac
atcagcctagagcagatcccttctgaccatgcattccttaaatataatacactgcgagat
gtaggaaaacaggctgtgaaggaacttctaaagtttatggctcaccctgctatctccagc
atcaaccttacagcagcccttggatctttagcatcgattgctcgacagaggccgatgttt
atggcagaagttatccaggcttatgagaccctgcatgccaacctaccccctacactagca
aagtcccaagtgagcagtgtgcgtaaaaatctcaaactgcagctattgagtgtactgcgt
catccatcatcttatgagtaccaggggcctataagtactctcctgttagacttgggtact
agccagggagagataaccagacatcttcctccgccaagggacagcaaccggaaaagggcc
agggaagatggtgaagggggacaaaagaagagccgcactgacattccactgcctgatgac
gatgatgataaagacacaatacagcttcccaccattcctgctcctgcaccaagcacgcag
tcggctacagacatcacagctgaattcctgcgcccactgctttccccagagaatgtggca
aacctggtgctcatcagtatggtgtatctaccggattccatgcctgcctccttccaggcc
acttacactccagttgagtcagctgggactgacgcccagattcgccatcttgctagactc
atggctacacaaatgacatcagttggcattggtccaggggttgagcagacaaaagatgtt
ccagtggatgtagtggaggaagagaacaccaagcctgaggggttggtgatcaaacgccgg
atttctgcacttaccaagggacaggctatatctgttttgggatgtcagagtgagaaggct
aaagaagaagaagaggaggaggaagatgctccacttgccaagaagcggcctgaacctata
ctaccagcaactcagatcaggccttctggtgttggaggtcgtaagaaggtatttaggttg
aaggaagtcacagagccacttacagaggtccaaatgaaatcattaaaattgggagctgtg
cagcggatcctccaggctgagcgcacagtgggtagctcaggggcttcccagatgcgagtg
aaggttctagcacgccttgtgacccagctagatataagtgtaaaagctgaagtcttgtcc
cactttctgagtgatcctcgaatgcgacttgacctagctttggcttggctgtaccaggaa
tactgtgaataccagtctggtgctggagaggaggcataccaagaatgtctaattgggata
ttgactggtctgcaagagcggcctgaccagcgagatggggtcttcacaaaagttgtcctt
gaagctcctttgctcacagactctgccttggatgtattgcggaaatactgcgaggatgag
gggcgcagttatttgggtatgtccaccttgcgggatttaatcttaactcgaccagctcgc
cagttccagtatctgcatcttttgttggatctgagctctcatgaaaaagataagatccgc
cagcagtcactgcactttattaaacgaatgtatgagaaagaaagtcttcgcccatacatt
gagaaattcgctctcaattacttgcagcttttagtccaccctaacccaccatctgttctt
tttggggcagataaggacacagaggtggcagctccatggactgaagacactgtaaagcag
tgtctctatctgtacctggcactgctgccgcaaaatcacaaactgatccatgagttggcg
tctgtctatactgaggccacagctgacatcaagaggacagtgctgagggttattgaaaca
ccgataagagggatgggaatgaactcacctgaattgcttctgttagtggaaaactgcccg
aaaggagctgagactttagtgactcgctgcctgcatatcttgactgacaaagtgccccca
tcccctgaactggtaaagcgtgtcagggaactgtatcacaagaggctcccagatgtcagg
tttttgattcctgtgcttaatggacttgacaagaaagaagtcattcaggctctaccaaaa
ctcataaagctgaacccaatagtggtgaaagaagtgttcaacagacttttggggacacaa
catggtgaagttagttcttccatgtctcctttgacccctggggatcttctggttgctctt
cataacatagattccagtaaatgtgatatgaaatctgtcataaaagctaccaatttgtgt
ttctctgcccgttctgtgtacacatcagaggttcttgctgtggtccttcagcaactgatg
gataccacccctctccctatgcttcttatgaggacagttatccaggctttaggaatgtat
ccaagactggggggcttcatcatgaatatacttactcgtcttatttacaagcaggtttgg
aaatatccaaaggtttgggaagggtttattaaatgctgccagagaaccaaaccacagtcc
ttcagtgttctgctccagcttccacccccacaactattgtctgttctccagacatcgcca
gacctccgtgatcctcttcttgtgcatgttagggcttttacaccacaccagctagcacat
gtccctcattccataatggctatactagaagctgaatcaaggacagacactggagcagaa
gaatctgcgcaagttgaagaggagcaagataccccagcccaggatatcattgcccgaagg
ctggctcaagaaaaatccttaaaaaaacaaatagaggaacaaaagggacgaaacaatcaa
gagatggaagaggtagcagaggttgacccacctgccatctttatagctgaagaagaagag
gaggaggattccatgaagtctcaaggaaaagaggtaccccaagaggacagtagtagtaat
gctaccaccgcagaaaaatctccagtagccgatgaacccatggaagaggatccagtagag
aagaaagactga
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integrated database retrieval system
