Xenopus tropicalis (tropical clawed frog): 395002
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Entry
395002 CDS
T01011
Symbol
lsm4
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03018
RNA degradation
xtr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
395002 (lsm4)
09123 Folding, sorting and degradation
03018 RNA degradation
395002 (lsm4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xtr03019
]
395002 (lsm4)
03041 Spliceosome [BR:
xtr03041
]
395002 (lsm4)
Messenger RNA biogenesis [BR:
xtr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
395002 (lsm4)
mRNA degradation factors
5'-3' decay
Lsm complex
395002 (lsm4)
Spliceosome [BR:
xtr03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
395002 (lsm4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
395002
NCBI-ProteinID:
NP_989371
Xenbase:
XB-GENE-945533
UniProt:
Q6P334
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Position
1:103366242..103381715
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AA seq
138 aa
AA seq
DB search
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEIIDMVKEEVMSKGRGRGGMQQQKQMKGRGAGGAGRGVFGGRGRGVP
GGGRGQQDKKPGRQSGKQ
NT seq
417 nt
NT seq
+upstream
nt +downstream
nt
atgttgccgttatcattgttaaaaactgctcagaatcacccaatgttggtggaattaaag
aatggtgaaacatacaacggtcatttagtgagctgtgacaactggatgaacatcaatcta
agagaagttatttgtacttcacgggatggtgataaattttggaggatgccagagtgctat
atacgtggaagcacaattaaatatttgcggatccctgatgaaattattgatatggtaaag
gaggaagtgatgtcaaaaggcagaggtcgtggaggcatgcagcaacaaaaacagatgaag
ggtagaggagccggtggagctgggcgaggtgtctttggagggcgaggcaggggagtccct
ggtggaggtaggggccagcaagacaaaaagccaggccggcagtctgggaaacagtga
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integrated database retrieval system
