Xenopus tropicalis (tropical clawed frog): 395046
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Entry
395046 CDS
T01011
Symbol
ddx49
Name
(RefSeq) probable ATP-dependent RNA helicase DDX49
KO
K14778
ATP-dependent RNA helicase DDX49/DBP8 [EC:
5.6.2.7
]
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
xtr03009
]
395046 (ddx49)
Enzymes [BR:
xtr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
395046 (ddx49)
Ribosome biogenesis [BR:
xtr03009
]
Eukaryotic type
90S particles
Helicases
395046 (ddx49)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
AAA_22
Cas3-like_C_2
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
395046
NCBI-ProteinID:
NP_989409
Xenbase:
XB-GENE-974822
UniProt:
Q6P1S5
LinkDB
All DBs
Position
1:112586492..112630518
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AA seq
479 aa
AA seq
DB search
MEGFSRLGLSSWLIDQCSQLGILKPSPVQENCIPPILEGRDCMGCAKTGSGKTAAFVLPI
LQKLSEDPFGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRK
PHVVIATPGRLADHIRSSNTFSIKKIRFLVLDEADRLLEQGCTDFTQDLQVILEAVPAQR
QTLLFSATLTDTLQELKTIAMNKPFFWESTSEVRTVEQLDQRYILVPEKVKDAYLVHLIQ
KFQDEHEDWSIMIFTNTCKTCQILNMMLREFSFPSVALHSMMKQKQRFAALAKFKSSVFK
ILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGMAITLVTQYDIHLV
HAIEEQINMKLEEFKVKESEVLKILTQVNVTRRECEIKLECTDFDEKKEINKRKQLILEG
KDPDLEAKRKAELEKIKKQKKKFKEHIQETMQKKREAQVRRKLKKKRLRQEKKAAKAPQ
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atggaagggttttcgaggcttgggttgtcttcctggcttatcgatcaatgtagccaactg
ggcatattgaaacctagtcctgtacaggagaattgcatcccgcccatcctggaaggccga
gactgcatgggatgtgcaaagactggcagtggaaaaacagctgcctttgtgctgcctatt
ctccaaaaactctctgaggatccctttggaatattttgcctggttctgacaccaactcga
gaactcgcatatcagattgcagaacaatttcgggtcctagggaagccactgggcttgaag
gattgcattattgttggtggaatggatatggtagcacaagctctggagttgtccagaaag
ccacatgttgtgatagccacaccaggccgactggctgaccacatccggagttcaaacact
ttcagcatcaagaagattcgtttcttggtgctggatgaagctgatcggctgctagaacaa
ggctgcacagatttcacccaggatttgcaggtgattcttgaagctgtccctgcgcaacgc
cagaccttgttattcagcgcaacccttacagacaccctgcaggaactcaaaactattgcc
atgaacaagccctttttttgggagtcaacctcagaggtaagaacagtggagcagttagac
cagcgatacatcctagtgcctgagaaggttaaggatgcctatttggtacatcttattcag
aaatttcaggatgaacacgaagattggtccatcatgatcttcactaacacctgcaaaacc
tgccaaatcctaaatatgatgctacgtgaatttagcttcccctctgttgctctgcactct
atgatgaaacaaaaacaaagatttgctgctcttgccaagttcaagtcgagtgttttcaag
attcttattgcaactgatgtggcagctaggggcctggatatacctactgtccaggttgta
atcaatcacaatactcccggcctgccaaagatctacattcaccgggtggggcgcacagca
agagcaggaaggaatggaatggcaataacattagtcacacagtatgatattcatctggta
catgcaattgaagagcaaatcaatatgaaactggaggagtttaaagtgaaggaaagtgaa
gtgctgaaaattttaacccaggtgaacgtgacccgacgggaatgtgaaataaaactggaa
tgcacagactttgatgagaaaaaagagataaacaagaggaaacagcttatcctggaagga
aaggaccctgatctggaagctaaaaggaaggcagaacttgagaaaataaagaagcagaag
aagaaattcaaggagcacattcaggagaccatgcaaaagaagagagaagctcaagtgcgg
aggaagctaaagaagaaacgtcttcgtcaggagaagaaggctgctaaggctcctcaatga
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