Xenopus tropicalis (tropical clawed frog): 403092
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Entry
403092 CDS
T01011
Symbol
aptx
Name
(RefSeq) aprataxin
KO
K10863
aprataxin [EC:
3.6.1.70
3.6.1.71
3.6.1.72
]
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
403092 (aptx)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xtr03400
]
403092 (aptx)
Enzymes [BR:
xtr01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.1 In phosphorus-containing anhydrides
3.6.1.70 guanosine-5'-diphospho-5'-[DNA] diphosphatase
403092 (aptx)
3.6.1.71 adenosine-5'-diphospho-5'-[DNA] diphosphatase
403092 (aptx)
3.6.1.72 DNA-3'-diphospho-5'-guanosine diphosphatase
403092 (aptx)
DNA repair and recombination proteins [BR:
xtr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
403092 (aptx)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
403092 (aptx)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DcpS_C
FHA_2
zf-C2HE
HIT
FHA
Motif
Other DBs
NCBI-GeneID:
403092
NCBI-ProteinID:
NP_991394
Xenbase:
XB-GENE-1015068
UniProt:
P61801
A9UL60
LinkDB
All DBs
Position
1:94454890..94476837
Genome browser
AA seq
347 aa
AA seq
DB search
MIECWLVSKDGKHGRIRLPHAETVVIGRGPETQITDKKCSRHQVQLMADCNKGYVKVKQL
GTNPTSIDGVDIGKEQKVDLKPGHTLHIVNNLYPYVIEFLEGATNPHAKRENENRSSSKR
TQENSLNEGTGTSMKLMKKESNISPSSSSGKNSSCSTEEKYNAQEVKSQGHWSQGLKASM
QDPTMQVFKDDKVVVIKDKYPKARYHWLVLPWQSIANLKVLRAEHLELVQHMHAVGQKIA
KEHSDSKCAPFQLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFTTDYFLESQAMIE
MIKTHGKVNVKDGVSELLKTPLMCHICRKEQANMPQLKEHLKKHWPT
NT seq
1044 nt
NT seq
+upstream
nt +downstream
nt
atgattgaatgttggctggtaagtaaggatggaaaacatggtcgaataaggctgcctcat
gcagagactgtggtaattggccgagggcctgagacacagataactgacaagaagtgctct
agacatcaagtgcagctaatggctgattgcaataaaggatatgtgaaggtcaaacagcta
ggaactaacccaacaagtattgatggtgtggacattggaaaagaacagaaagtggacctg
aagcctggtcacactttgcatattgtgaataatctttacccatatgtgatagagtttttg
gaaggagcaacaaatccacatgccaaaagagaaaatgaaaacagaagctcaagcaagagg
acacaggaaaactcattaaatgagggcactggaacatctatgaaattgatgaaaaaagaa
tcaaatatcagcccttccagtagcagtggaaaaaacagcagctgctcaactgaagaaaaa
tataatgcacaggaggttaaaagccaaggccattggagccaaggtttaaaggcttccatg
caggatccaactatgcaggtctttaaggatgacaaagttgtggtgatcaaggacaaatac
cctaaagcacgataccactggttggttttgccatggcaatcaatagcgaaccttaaggtt
ctgagagcagagcatctggagctagtgcagcacatgcatgctgtgggacaaaagatagca
aaggagcactcagattcaaaatgtgcaccatttcagttgggttaccatgcaattccaagc
atgagccatgttcatttgcatgttatcagccaagactttgattccccttgccttaaaaac
aaaaagcactggaactctttcactacggattactttttggaatcccaagctatgattgaa
atgataaaaacacatggcaaagtcaacgtcaaagatggagtgtctgagcttctgaaaact
cctcttatgtgccacatttgcaggaaggagcaagcaaatatgcctcaactgaaggagcac
ttaaagaagcactggccaacataa
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