Xenopus tropicalis (tropical clawed frog): 407918
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Entry
407918 CDS
T01011
Symbol
acin1
Name
(RefSeq) apoptotic chromatin condensation inducer in the nucleus
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03013
Nucleocytoplasmic transport
xtr03015
mRNA surveillance pathway
xtr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
407918 (acin1)
09122 Translation
03013 Nucleocytoplasmic transport
407918 (acin1)
03015 mRNA surveillance pathway
407918 (acin1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xtr03019
]
407918 (acin1)
03041 Spliceosome [BR:
xtr03041
]
407918 (acin1)
Messenger RNA biogenesis [BR:
xtr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
407918 (acin1)
Spliceosome [BR:
xtr03041
]
Complex C
Other components
EJC/TREX
407918 (acin1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
407918
NCBI-ProteinID:
XP_012808729
Xenbase:
XB-GENE-959536
UniProt:
A0A8J0SCC3
LinkDB
All DBs
Position
1:complement(140337883..140385859)
Genome browser
AA seq
1951 aa
AA seq
DB search
MAELEDVTLDGRPLDSLRVTDLRAALEERGLAKSGQKSALMKRLKGALMLENLQKHSTPH
AGFQPNSQMGEEMGQNSFIKQYLEKQQELLRQRLQKEAREAAETGEPLVESEDENIPTDM
VPEPPDLIRSVMKIPEEGLQKRTPKKCQPVLEEPEDSEEELPRKRERRSPRVKQAKTLKP
LVLAQPLQEQEPRRVSTRVRRSKGDANTLKEEAEDVGEEEEEIDEDQEVKLDEETPKRRR
SSTRTVTPQQPQKSPGPNRSPSPSGLTERRCRTLSAEAEQVPEERVPPLLPLEGIRQQMS
EKHTSPESEKSVSPKFQIDRSYKSPQKWGRQTREKIERGLEPDAQKYQESSFVIRQTSSW
SQESEKIKIKHQELKLNEEKEGELKPLFITKSPTSKDIKPSPALVLIKPPSQGRSDRKTT
LGDHSIQIVEKSSGRGVQAMSILEKQEPATNTSVKEDSKSLQIPICPDIERSETESLPEI
DQNVPRQSVTDYEPEPEKPLTVSSIGAPAITKMRKLKIKTLKSTYDHSQHDIAKIGHAHI
HTNLEKETPDLSEIIVCRDVPFVPQIKECEQQSEHKTATPHPKEELDNTSVMSQQEDNRE
TTEHKEAEESMETEEHVDTKEHGEKGEDTSYIISDQEKLVEKPRISSPCLSVLEIAEEPS
LPEHAMREELIVPCEMNAANPPTALSHSVKDISLKIQETSVLKPEEEVPQSIQEDIHVEL
INTKEQERASLETVKEIDSEDTSETVLCVTSTTLLSHDTSVCTEVKPSPVYLQEKDSPIL
VSPTEDVAVEEALEPPQDIPGFIEEVTPLKSPETNIQMAAEKDTSPINDEDSKENIPEVT
VLQITTESVTDSVDQEMFDMPIVQDTPELEAPEEKNTFIQDKTNIIAVIQNVPNELKPAD
GLEPTVDVSFENIRDDEPTAVFAPDESSVEVQETTSSASQKHIVPLVMEEPPIPVQDDHG
LDLVAKESECPSKNEYSEMMASEMLTDNQTPAETVQSKESASLITQESNELKNSNTISEG
NNDSQQELFLEEKMEDTLEDSKSAFSIMQELNVNSDSLPQSTNPEEIVDKPTISTTIDEE
STEFTDCTTVVQLDQPSSVEAVETLKNNIASESECLAPMETTPSTALEELEPSPENNEIE
TARFPDSEMPCTEEAVEKQDAAACATEEPSLHTDKGDLSDEKEDISIEKEIKHDPQEDEL
VVPLKSSPRRRTSSSSSSSSSSSSRSSSSSSERSSHSRHSSHSKSSSPDRYSRRSRSSSV
SSSKSRSSSCHSDKEATKMASPEVMNSPDHQPPRSPSLPNQESSELPQSTSPPPSPKTMQ
LQEDLIPPLNNTVQPGRGVRRQLHSDSEDPDMQEHTKRIKLEQDSEDQDSKSPVPREQEV
EEEQSPEADSGTPESEDVVMEASECQTEGETREAAPPQSSEEFCEGDDKKESTTPPRTFK
RKISVISAGKCSTQPSSSTTTNSDNEGAHPARRRRWGASTATTQKKPSISISTESLKNLI
PEIKEIKQEAVVDLHAEDTHISEDEAERNGDDGSHDKGLKICRTVTQVVPAEIKENGQEE
GEVKEDEAENAAEPEPDPAPVEIEVAPPVEPEVKKPPAESPARAEVRVTLGDTLLRRSIS
QQKSGVSVTIDDPVRTASQLPSPPRNKISCIVHICNLVRPFTLGQLKELLSRTGAIIEEN
FWIDKIKSHCYVTYSTTEEAVATRNSLHGVKWPQSNPKFLSVDFAEQDELDFHRGLLVER
PPEPKPEEPPHPHPHIPALRGEHREHDRGAREQWAEREREMERRERTRSEREWDRDKIRE
GPRSRSRDRRRKEHAKSKEKKNEKKEKVQEEPPAKLLDDLFHKTKAAPCIYWLPLTEDQI
LKKVADRAERAKEREKRRKEQEEQEEEERKERAKEREKEAERNRERAREADREKRREHSR
ERPRERERRETKRHSRSRSRSTPVRDRGGRR
NT seq
5856 nt
NT seq
+upstream
nt +downstream
nt
atggcagagctcgaagacgtaacgctggacggaaggccgcttgacagcctacgggtcacc
gatttgagagccgcgctagaggagcggggactggccaaaagcggccaaaaaagcgcactt
atgaagcgtcttaaaggggcattgatgctggaaaatctacagaaacactctactccccat
gctggtttccagccaaattcacagatgggagaggagatgggacaaaacagttttattaaa
cagtatctagagaagcaacaagagttacttcgccagagactacagaaagaagccagagag
gctgcagaaactggagagcctttagtagaatctgaggatgagaacatacccactgacatg
gttccagagccacctgatctaatccggtctgtcatgaagattccagaagaagggctgcaa
aagcgcacaccaaaaaaatgccaaccagttttggaagagcctgaggattcagaggaagag
cttcctcgaaagagagagaggagatcaccccgggtaaagcaggccaaaacattaaagcct
ttggtgctggcgcagccattacaggagcaggagccgcgccgagtatctacacgtgtgcgg
cggtccaaaggggatgcaaacactttaaaagaagaagcagaagatgtgggggaagaggaa
gaagagatagacgaagatcaggaggtgaaactagatgaagaaactcccaaaagaagaaga
tcttctacaaggacagtcacccctcagcaaccccagaagtcaccaggaccaaatcggtca
ccttctccatctggtttgacagaaagaaggtgcagaacactatcggctgaggcagaacaa
gtgcctgaggagagggttccaccattgctgcctttggaaggcatacggcaacagatgtcc
gagaagcatacatctccagaatctgaaaaatcagtatccccaaagtttcaaatagacagg
agttacaaatctcctcagaagtgggggcgtcaaacaagggagaagatagaacgaggttta
gagccagatgcacaaaagtatcaggaatcttcttttgttatccgacaaacatcaagttgg
agccaggaaagtgaaaagattaaaattaaacatcaagaactcaagctgaatgaggagaag
gagggggaactaaaaccgttatttataacaaaaagtccaacatcaaaggatataaaacca
agccctgcactggttcttattaagccaccttctcaaggaaggtcagacagaaagacaact
ctgggagaccatagcattcaaatagtggaaaagtcatcgggaagaggtgtccaagccatg
tctatattagaaaaacaagagccagccacaaatacaagtgtcaaagaagacagcaaatcc
ttgcaaatacctatatgccctgatattgaaagatcagaaacagagtctttgcctgaaata
gatcagaatgttccaagacagtctgtaacagactatgaacctgaacctgaaaagccacta
acagtttcctccataggtgcacctgccataaccaaaatgagaaaactgaaaattaagaca
cttaaaagtacatatgatcattcacaacatgatatagcaaaaataggacatgcacatatc
cataccaatttggaaaaggagacaccagatttaagtgaaattattgtatgcagagatgta
ccatttgtgcctcaaataaaggaatgtgagcaacaatcagagcataaaactgcaactcct
catccaaaagaagagttggataacacatctgtaatgagtcagcaggaagataatagggag
actacagagcataaagaggcagaggaaagtatggagactgaggaacatgtggatactaaa
gaacacggggaaaagggagaagataccagttatattatttctgatcaagaaaaactggtg
gaaaaaccacgaattagttccccttgtttatctgttttagagatagcagaggaacctagc
ctccctgagcatgctatgagagaagaactcattgttccctgtgaaatgaatgcagcaaat
cctcctacagctctaagtcattctgtcaaagacatatccttgaaaattcaggaaacttca
gtattaaagcctgaagaagaagtgccacaaagtattcaagaagatattcatgtagagcta
ataaataccaaagaacaggaaagagcatctttagagacagtgaaggaaattgattctgaa
gacacatctgaaactgttttatgtgtcacatcaactacattactgtcacatgacacatct
gtatgtacagaagttaagccatctccagtatatttgcaagaaaaagattctccaattttg
gtgtcgccaacagaggatgttgcagtagaggaagctttggaaccaccgcaagacattcct
ggctttatagaggaagtaacacctttaaaaagcccagagacaaatatacaaatggcagca
gagaaagacaccagtccaataaatgatgaagattcaaaagaaaatattccagaagtaacc
gttctacaaattacaactgaatctgtaactgattctgtagatcaggaaatgtttgatatg
cctatagttcaagatactcctgaactagaagcaccagaagaaaaaaatacatttatccaa
gataaaactaatatcatagcagtgatccaaaatgtgcctaatgaattaaagcctgctgat
ggtctagaacctacagtcgatgtcagctttgaaaatatcagagatgatgaacctacagca
gtttttgcacctgatgaaagttctgtggaggttcaagaaactaccagttcagcatcacaa
aaacatatagtacctctagtaatggaagaacctcccataccagtacaggatgatcacggt
ttagacctagtggccaaagagagcgaatgtccctcgaaaaatgaatattctgaaatgatg
gcttcagaaatgttaactgacaatcagacacctgctgaaactgtgcaatcaaaagagagt
gcctcactgattacccaggaaagcaatgaattaaaaaatagcaacactatcagtgaaggc
aataatgattctcaacaagaactattcttagaagagaagatggaagatactttggaagat
agcaagtctgctttttctattatgcaagaactaaacgtaaattcagacagcttgccacaa
tccacaaatcctgaggaaattgtagataaacctacaataagcacaactattgatgaggaa
agcacagagtttactgattgcacaacagttgtacagctagatcagccatctagtgtagaa
gctgtagaaacattgaaaaacaatattgcatctgaatcagaatgcctagctcccatggaa
actacaccatctactgcccttgaggaattagaacctagccctgaaaacaatgaaattgag
actgctagattccctgattccgaaatgccctgcacagaagaagcagtagaaaaacaagat
gccgccgcatgtgcaacagaagaaccttcattacatacagacaaaggtgatttaagtgat
gaaaaagaggatatttctattgagaaggaaataaagcatgatccacaggaggatgaactg
gtggttccactcaagagttcaccacgaagaagaacttcctcctcatcatcgtcatcgtcc
tcctcctcctctcgctcatcaagctcttcttcagagagatcatcccattcaagacatagt
tcccattctaagtcatcttctccagacaggtacagccggaggtctagatcttcatctgtc
tcttcatctaagtcaagatcttcttcatgtcacagtgacaaggaggcaacaaaaatggca
agccctgaagtaatgaattctcctgatcatcagcctcctagaagcccgtcacttcctaat
caagagtcatcagagctcccacagagcacctctccacctccttcacctaaaacaatgcag
ctgcaggaagacctaatacccccattgaataatactgttcagccaggtcgtggggtacgt
cggcagttgcattcagattcagaagacccagacatgcaggaacacactaaaagaataaaa
ttggaacaagattctgaggatcaggactctaaaagtccagtcccaagggagcaggaggtg
gaagaggagcaaagtccagaagctgacagtggcacgccagagagtgaggacgtggtgatg
gaggcttcagagtgtcaaacagagggtgagactcgagaggctgcacccccacaatcctcg
gaggaattctgtgagggagatgacaaaaaagagagtactactccaccaagaacattcaaa
aggaagatctctgttatatctgctggtaaatgttctactcagccttcatcgtccactaca
acaaacagtgacaatgagggtgctcatcctgcaagacggaggcgctggggggccagtaca
gcaacaacacagaaaaaaccctcaataagtatctccactgaatcacttaagaatcttatc
ccagagatcaaggagataaagcaagaagcagtggtggaccttcatgctgaggacactcac
atttctgaagatgaggcagagaggaatggcgatgatggttctcatgataaaggcctcaaa
atttgtagaacggttacacaggtggtaccagcagagattaaagagaatgggcaagaggaa
ggagaagtaaaggaggatgaggcagaaaatgctgctgaaccagaaccagatcctgctcca
gtggaaattgaggtagctcctcctgttgaaccagaagtcaagaagccccctgcagagagt
cctgcaagagcagaggttagagtaacattgggagatacactcttaaggcgttcaatcagt
cagcaaaagagcggtgtctctgttactatagatgaccctgttcgaacagcatctcagctt
ccatctcccccacgcaacaaaataagctgtatcgtgcatatctgtaatctggtccgacct
ttcactttgggacaactaaaggagttgctttctcgtacaggagctataatagaggagaac
ttttggatagacaaaatcaaatcccactgctatgtcacgtactccacaacagaagaagca
gttgcaactagaaactctcttcatggtgtgaaatggccacagtccaatccaaaatttctc
tctgtcgactttgctgagcaagatgagttggacttccatcggggtcttttggtggagcgc
ccaccagagccaaaaccagaggagccacctcatccccatccacacatccctgctctgcga
ggtgagcacagggaacatgaccgaggagcaagagagcagtgggcagagagagagcgagag
atggaaagaagagagcgcacacgttcagagagagagtgggatagagacaagatccgggaa
ggacccagatcacgctctcgagaccgtaggaggaaagaacatgcaaagtccaaggagaag
aagaacgaaaagaaagagaaagtacaagaagaacccccagcaaaactcttagatgattta
tttcacaaaaccaaagctgccccctgtatatactggctcccactcactgaagaccagatt
ctaaaaaaagttgccgatagggcagagcgtgcaaaagagagagaaaagcggcggaaagag
caagaggaacaggaagaggaggaaagaaaggagagagcaaaggagagggagaaagaggct
gaaagaaatagagagagagcacgagaggctgacagagaaaagagaagagagcacagtaga
gagcgcccgcgtgaaagagaacggcgggaaacgaagaggcacagccgcagtcgcagtaga
agtacaccagtgagagaccgaggaggccggcgctga
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integrated database retrieval system
