Xenopus tropicalis (tropical clawed frog): 407924
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Entry
407924 CDS
T01011
Symbol
katnb1
Name
(RefSeq) katanin p80 WD40 repeat-containing subunit B1
KO
K18643
katanin p80 WD40 repeat-containing subunit B1
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
xtr04812
]
407924 (katnb1)
Cytoskeleton proteins [BR:
xtr04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule severing proteins
407924 (katnb1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
Katanin_con80
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
NBCH_WD40
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_SPT8
Beta-prop_IFT122_1st
Beta-prop_IFT140_1st
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_Vps41
Beta-prop_HPS5
eIF2A
WD40_RFWD3
RMC1_N
Beta-prop_WDR19_1st
Beta-prop_RIG_1st
Beta-prop_IP5PC_F
Beta-prop_LRRK2
Beta-prop_WDR35_TULP_N
Beta-prop_NWD2_C
VPS8_N
Beta-prop_VPS8
WDR54
WD_LRWD1
Ge1_WD40
PD40
Motif
Other DBs
NCBI-GeneID:
407924
NCBI-ProteinID:
NP_998874
Xenbase:
XB-GENE-998271
UniProt:
Q6NVM2
LinkDB
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Position
4:complement(76054642..76077043)
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AA seq
655 aa
AA seq
DB search
MATPSPTKTTWKLQEIVAHGSSVSSVVLGKSSGRLVATGGDDCRVNLWSVNKPNCIMSLT
GHTTPVESVRFNNAEELIVAGSQSGSLRVWDLEAAKILRTLMGHKANVCSLDFHPYGDFV
ASGSLDTNIKLWDVRRKGCVFRYKGHTQAVRCLRFSPDGKWLASASDDHSVKLWDLTAGK
MMAELSEHKGPVNIIEFHPNEYLLASGSADRTVRFWDLEKFQLIGCTEGETIPVRAILFS
SDGGCIFCGGRDALRVYGWEPDQCFDTVPVGWGKVCDLAICNKQLIGVSSAQSTISSFVV
DLTRVKMTGCAPQGPVPAEMPISQPAPAGTSLRRIYERPSTTCSKPKRVSPTSDDEEKES
RAEIQNPEDYKEIFQPKNAISRTPPRNSEPFPAPPEDDTSILKEPVAPIPDVVTPATSNK
NNTEQLQRPPVAASTPIVCQEPSPVPAPQSKPPVISAARNEPIGLKAADFLPAVKTSSPT
EVVDDEAVSQIRKGHDTMCMVLTSRMRNLDTVRAVWSSGDIKTSIDSAVAINDLSVVVDL
LNIINQKASLWKLDLCLTVLPQIEKMLQSKYESYVQTGCISLKLILQRFLPLITDILAAP
PSVGVDISREERLSKCKLCYKQLRILSPLVKSKASQSGRYGSAFRELHLLMSGLE
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
atggcaacaccttcacctacaaaaacaacatggaagctacaggaaattgttgcccatgga
agcagtgtatcttctgtggttttggggaagagttctggtcgtctggtggccacaggagga
gatgattgtcgtgttaatctctggtctgttaacaaacccaactgcattatgagtctaact
ggacatactactccggtggagagtgtgcgcttcaacaatgctgaagaattaattgtggct
ggctcacaatctggatctttgcgcgtttgggatctagaagcagctaagattctaaggaca
ctaatgggacacaaagccaatgtctgcagcctggattttcatccttatggggattttgta
gcatctgggtccttggacactaacataaaattatgggatgtgcgcaggaaaggctgtgtt
tttcgctataagggtcatacacaagcagttcgctgtctccggtttagtccagatgggaag
tggttggcatctgcttcagatgatcactctgtaaagctctgggacctgactgctggaaaa
atgatggctgagttatcagaacataaaggacctgttaatattattgagtttcatcccaat
gagtaccttttggcatctggaagtgcagacaggactgtacgtttctgggacctagagaaa
tttcagctgatcggttgtacagagggagagacaattcctgtaagggcaatccttttcagc
agtgatggtggctgcattttctgtggagggcgagatgcactgcgggtgtatggctgggaa
ccagatcagtgctttgacactgttcctgtgggatggggcaaggtttgcgacctggccatc
tgtaacaaacagctgattggagtgtccagtgctcagtccactatctcctcgtttgtggtt
gacttgactcgagttaaaatgactggctgtgccccacaagggcctgttcctgcagagatg
cccatcagccaacctgctccagctggaacctcgcttaggcgtatatatgaacgtccatct
actacctgcagcaagccaaaaagggtaagccctaccagtgatgatgaggagaaagaatcc
agagctgagatccagaatcccgaggactacaaagaaatctttcagccaaaaaatgcaatc
tcaaggacacccccacggaatagtgaaccattccctgctccacctgaggatgatacaagt
attttaaaggaaccggtagcacccatcccagatgttgtgactcctgcaaccagcaacaaa
aacaatactgaacagctgcagcgtcctccagtagctgcctctacaccgattgtatgtcag
gagccaagtcctgttccagcacctcaaagcaagcctccagtgatatctgctgcaaggaat
gagcccattggacttaaagcagctgattttctgccggctgtgaagacttcatctccgact
gaagtggtggacgatgaggcagtgtcccagattcgaaagggacatgacacaatgtgcatg
gtgttaacaagtcgaatgcgtaacctagatactgtgagagctgtctggagttcaggagac
attaagacatctatagattcagctgtggccattaatgatctatcagttgttgtagatctt
ctaaacatcatcaaccagaaggcgtctctgtggaagctggacctttgtttgactgttcta
cctcagattgaaaagatgttgcagagcaagtatgagagttatgttcagactggctgcatt
tcacttaaactgatcctacagaggtttctcccgctgatcactgacatcctggctgcacct
ccatctgttggtgtggacatatctcgtgaggaaaggctttccaagtgcaaattatgttac
aagcagctgcgcattctcagtccgctggtgaaaagcaaagcttcgcagagtggccgctat
ggaagtgcctttcgagaactgcatctcctcatgtctgggttggagtaa
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