Xenopus tropicalis (tropical clawed frog): 407954
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Entry
407954 CDS
T01011
Symbol
srsf6
Name
(RefSeq) arginine/serine-rich splicing factor 4 isoform 1
KO
K12893
serine/arginine-rich splicing factor 4/5/6
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03040
Spliceosome
xtr05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
407954 (srsf6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
xtr03041
]
407954 (srsf6)
Spliceosome [BR:
xtr03041
]
Common components
Common spliceosomal components
SR proteins
407954 (srsf6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_3
Motif
Other DBs
NCBI-GeneID:
407954
NCBI-ProteinID:
NP_001001248
Xenbase:
XB-GENE-488901
UniProt:
Q6NVB3
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All DBs
Position
10:39851509..39860831
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AA seq
568 aa
AA seq
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MPRVYIGRLGYHVREKDIQRFFGGYGKLLEVDLKNGYGFVEFEDSRDADDAVYELNGKDL
CGERVIVEHARGPRRDRDGYGYGSRSGYRNQRSGRDKYGPPVRTEFRLIVENLSSRCSWQ
DLKDFMRQAGEVTYADAHKERANEGVIEFRSYSDMKRAMEKLDGTEINGRRIRLVEGKAR
HRRSYSGSRSRSRSRSRRRSRSRSRQPSHSRSRSRSHSPAKKGRSPAKKSRSHSPTKSSH
SQSPGKSQSRSRSRSRSKERASKPKSEHGSRSRSTSRGKQERSRSRSKGLVERSRSRSKE
NEERSRSRSKGMDERSRSRSKTQDDRSRSRSKAKDDRSRSRSKAKDDRSRSRSKAKDDRS
RSRSKAKDDRSRSRSKGKDERSRSRSKAKDESSCSRSKDNRERSLSPSKSKHDRSRSQGK
HERSGSRSKSKRDRSGSRSKSKQERSSSWSKSKGERSSSRSKSKQERSRSRSKSKRERSR
SRSRGKRERSRSHSRGRRDSSEGRSSAKRARSAHSRSRSRSPQENGKGGARSRSPSPLPV
SRSKERSLSPLPRAASASSSRSRSSSRE
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atgccgcgggtgtatatcggaaggctcggctaccacgtacgggagaaggatatccagcgg
ttcttcgggggctatgggaagctactagaggttgacttaaagaacgggtatggctttgtg
gagtttgaggactcgagggatgctgatgacgcagtgtacgagctaaatggcaaagatcta
tgtggcgagcgtgtgattgtagagcatgcccggggtccacggcgagaccgggatggatac
ggctatggaagtcgcagtggatacaggaaccagagatctggcagggacaagtatggtccc
cctgtgcgcacagaattcagacttatcgtggaaaacctctccagcagatgcagctggcaa
gatctcaaggatttcatgaggcaggcaggcgaggtgacatacgctgatgcacataaggag
cgggccaatgagggggttattgagttcaggtcttactctgatatgaagagagctatggaa
aagttggatggcacggagataaatgggcgcagaatccggctggtggaaggaaaagctcgt
cacaggaggtcttattctggcagccgctccagatcacgctctcgtagcaggcgaagatca
cgcagtaggagtaggcagcccagccacagcagatccaggagtcgatctcactcacctgcc
aaaaaaggccgctcccctgctaaaaaaagcaggtctcattcccctacaaagagcagccat
tcacagtcccctggaaagagccagtcacggtctagatcaagatctagaagtaaagaacgg
gcaagcaagccaaaatctgagcatggttcacgatcacgaagcacatcccgaggaaaacag
gagaggtctcgtagtcgctccaaaggcctggttgaaaggtcccgcagtagatcaaaagaa
aatgaagaaaggtctcgcagtcgatcaaaaggcatggatgaaaggtctcgtagtcggtca
aaaactcaggatgaccggtctcgcagtcggtccaaagccaaggatgaccggtctcgcagt
cggtccaaagccaaggatgaccggtctcgcagtcggtccaaagccaaggatgaccggtct
cgcagtcggtccaaagctaaggatgaccggtctcgcagtcggtccaaaggaaaggatgaa
cggtctcgcagtcggtccaaagctaaggatgaaagttcttgcagtcggtccaaagacaac
agggaaagatcacttagtccatcaaagagcaagcatgacagatctcgtagccaaggcaag
catgagaggtctggcagccgatcaaaaagcaagcgtgatagatctggtagccggtcaaag
agcaagcaagaaaggtctagcagttggtcaaagagcaagggggaaaggtctagcagccgg
tcaaaatccaagcaggaaagatcacgtagtaggtcaaagagcaaacgagagagatcccgc
agccgttccagaggcaaaagagagagatcccgtagtcattccagaggcagaagggatagt
tccgaaggtcgctcgagtgctaaaagggcaaggtctgctcatagtcgctccagatcccgt
tctccacaggaaaatggaaagggaggtgcaagatctcgctccccgtctccccttccagtc
tctaggagcaaggagcgatctctcagccctcttcctcgggctgcttcagcttccagctct
aggtctcgctctagctcacgagaatag
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