KEGG   Xenopus tropicalis (tropical clawed frog): 447964
Entry
447964            CDS       T01011                                 
Symbol
zmat5
Name
(RefSeq) zinc finger matrin-type protein 5
  KO
K13152  U11/U12 small nuclear ribonucleoprotein 20 kDa protein
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:xtr03041]
    447964 (zmat5)
Spliceosome [BR:xtr03041]
 Other splicing related proteins
  Minor spliceosome components
   Minor spliceosome specific factors
    447964 (zmat5)
SSDB
Motif
Pfam: zf-U1 zf-CCCH_4 zf_CCCH_4 zf-CCCH zf-CCCH_2
Other DBs
NCBI-GeneID: 447964
NCBI-ProteinID: NP_001165292
Xenbase: XB-GENE-984924
UniProt: F7B028
LinkDB
Position
1:144652823..144661917
AA seq 165 aa
MGRRYFCDYCDRSFQDNLHNRKKHLNGVQHQRSKKAWFDAFRDASEVLAEEQTKKVCRRF
IQCGQCDFGPGCRFSHLTVEELEALKGQVEAERRAREMQRRQLPPCNIERWLEERAKKKS
VSSKNDSVSQPPTYQLPPGWPPLCELPPSLHPPSEWDEPPGLEWG
NT seq 498 nt   +upstreamnt  +downstreamnt
atggggaggcgatatttctgcgactattgcgatcgctcttttcaggacaatttacacaac
cgcaagaagcacctgaatggcgtgcagcaccagcggagcaagaaggcctggttcgatgcc
ttcagagatgcctcggaggtccttgcagaagaacaaaccaagaaagtctgcaggagattc
atacagtgcggccagtgtgactttggccctggctgccgcttttcccatctgacagtagag
gaactggaagctctaaagggtcaagtagaagcagagcggagggcaagagagatgcagaga
agacaattgcccccttgcaacatagagagatggcttgaagagagggccaagaaaaagagt
gtaagcagtaaaaatgattctgtttctcaaccacctacataccaattgccgccaggctgg
ccacctctatgtgagctgcctccttcactccaccccccctcagaatgggatgaaccacct
ggcctggaatggggctga

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