KEGG   Xenopus tropicalis (tropical clawed frog): 448017
Entry
448017            CDS       T01011                                 
Symbol
prpf19
Name
(RefSeq) pre-mRNA-processing factor 19
  KO
K10599  pre-mRNA-processing factor 19 [EC:2.3.2.27]
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03040  Spliceosome
xtr04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    448017 (prpf19)
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    448017 (prpf19)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:xtr03041]
    448017 (prpf19)
   04121 Ubiquitin system [BR:xtr04121]
    448017 (prpf19)
   03400 DNA repair and recombination proteins [BR:xtr03400]
    448017 (prpf19)
Enzymes [BR:xtr01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     448017 (prpf19)
Spliceosome [BR:xtr03041]
 Complex B
  Other components
   Prp19 complex
    448017 (prpf19)
 Complex C
   Prp19-CDC5 complex
    448017 (prpf19)
Ubiquitin system [BR:xtr04121]
 Ubiquitin ligases (E3)
  U-box type E3
   448017 (prpf19)
DNA repair and recombination proteins [BR:xtr03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    448017 (prpf19)
SSDB
Motif
Pfam: WD40_Prp19 Beta-prop_WDR5 Beta-prop_WDR3_1st WD40 Beta-prop_THOC3 Beta-prop_IFT122_1st Prp19 WD40_WDHD1_1st Beta-prop_WDR36-Utp21_2nd WD40_Gbeta WD40_CDC20-Fz Beta-prop_WDR3_2nd Beta-prop_EML_2 WDR55 Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd EIF3I Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_EML DSE1_N Beta-prop_WDR75_1st Beta-prop_EIPR1 WD40_MABP1-WDR62_1st Beta-prop_Aladin Beta-prop_IFT140_1st Beta-prop_TEP1_C ANAPC4_WD40 NBCH_WD40 U-box CFAP251_N WDR90_beta-prop_4th Beta-prop_SCAP Beta-prop_NOL10_N ASA1 Beta-prop_Vps41 Beta-prop_VPS8 Beta-prop_RIG_2nd Beta-prop_HPS5 WD40_RFWD3 Beta-prop_WDR41 Beta-prop_DCAF4 PAC11 PROPPIN PEP5_VPS11_N Beta-prop_DCAF12 Beta-prop_Nup120_160 zf-Nse Nucleoporin_N Beta-prop_ACSF4 HDC ATG16
Other DBs
NCBI-GeneID: 448017
NCBI-ProteinID: NP_001005435
Xenbase: XB-GENE-975233
UniProt: A0A8J0PDY3 Q6GLG2
LinkDB
Position
7:complement(60604815..60629315)
AA seq 439 aa
MSLTCYISNEVTDRPCISPVSGHIFDRRLIEKYLAENGTDPVTNQPLSEDQLIDIKVAHP
IRPKPPSATSIPAILKSLQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARL
TKEVTAAREALATLKPQAGISVPQASPMPQAGAAGSAEAMELGELIGMSAEIIQKLQDKA
TVLTTERKKRGKTVPEDLVKPEELSKYHQVSSHVGLHSASVPGILALDLCPTDTNKTLTG
GADKSVVVFDALSQQILATLKGHTKKVTSVVFHPSQELVFSASPDSTIRVWSVPDASCAQ
VLRAHEGAVTGLSLHATGDYLLSCSDDQYWAFSDIHVGRVLTKVTDESSGCALTCAQFHP
DGLIFGTGTVDSQIKIWDLKERSNVANFPGHSGPVSCIAFSENGYYLATAADDSSVKLWD
LRKLKNFKTLQLEEGYQVQ
NT seq 1320 nt   +upstreamnt  +downstreamnt
atgtctttgacatgttatatcagtaatgaggtcacagatcgcccctgcatttccccggtg
tcgggtcatatttttgatcgccgccttattgaaaagtatttggctgaaaatgggacagat
ccagtaacaaatcagcccttaagtgaggatcagttgattgacattaaagtagcccatcca
attcgtcctaaaccaccttctgcaaccagtattccagcaatcctgaaatcattgcaagat
gagtgggatgcagtgatgctccacagtttcactttgcgtcaacaactacagaccactcga
caggagctctctcatgcactttaccagcatgatgctgcttgtcgtgtcattgctcgtctt
accaaggaggtgacagctgcccgtgaagctctggctacgctgaagcctcaggcaggaata
tctgttcctcaagccagccctatgccacaggctggagcagctggctcagcagaagccatg
gaacttggtgaattgattggaatgtcagcagaaatcattcaaaagcttcaagacaaagca
actgtgcttactacagaacgtaagaagcgtggcaaaactgtcccagaagatctggttaag
ccagaagaacttagcaaatatcaccaggtttcctcccatgtgggtctgcacagtgcaagt
gtccctggtattttggcattggatttgtgtccaactgacacaaacaaaactcttactggt
ggggcagacaaaagtgttgttgtgtttgatgcactatcgcaacagatccttgctactctt
aaaggtcataccaagaaagttaccagtgttgttttccacccatctcaggagctagtgttt
tctgcttctccagactccacaatacgggtctggtctgttcctgatgcctcctgtgctcaa
gtgttaagagctcacgaaggggcagtgactggtctaagtttacatgcaactggagattac
ttgcttagctgctccgatgatcagtactgggcattctctgatatacatgtgggccgtgta
ctcaccaaagtaacagatgaatcttctgggtgtgctcttacttgtgcccagtttcaccct
gatggtctcatttttggcactggaacagtggactcccaaattaagatctgggatcttaag
gaacgctctaatgtggctaatttccctggacactctggtcctgtatcgtgcatagctttc
tctgagaacggttattatctggctacagctgctgatgactccagtgtcaaactgtgggat
ctgcgaaaactgaagaacttcaaaactctgcaacttgaagaaggatatcaggtacagtga

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