Xenopus tropicalis (tropical clawed frog): 448067
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Entry
448067 CDS
T01011
Symbol
nup85
Name
(RefSeq) nuclear pore complex protein Nup85
KO
K14304
nuclear pore complex protein Nup85
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
448067 (nup85)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xtr03019
]
448067 (nup85)
03036 Chromosome and associated proteins [BR:
xtr03036
]
448067 (nup85)
Messenger RNA biogenesis [BR:
xtr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
448067 (nup85)
Chromosome and associated proteins [BR:
xtr03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
448067 (nup85)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nucleopor_Nup85
Motif
Other DBs
NCBI-GeneID:
448067
NCBI-ProteinID:
NP_001004817
Xenbase:
XB-GENE-1008050
UniProt:
Q6DK84
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All DBs
Position
10:complement(44396581..44408723)
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AA seq
653 aa
AA seq
DB search
MEELDVDPAETPIPGLGQQNRHIGFSWGPGDLLLYETLYQKQGSETAARCPFMYLVRSDE
DIYSPVLRKLFNESHSIFVGLQKSAEENAGKSRKAQLVQVSRNYRSVLRACMEEMHALSE
STREPSQNTKYISQISILSAMELSWNLCEILFIESAPAGPLLILLLDWVRLHVCEVDNIV
QDVLRSERPTEHEKFWDGVTGYVLQGRMNEARQLLAKEASSSVSARSMCRVLDDLLKKMP
MLNTAGTQTLTEFELKWQHWREECERHLQNGTFSSNPHMEVVCRVLVGDEEVILEKRDLM
TTWYHFLVSRLLFKHPTVKPTELHFYAQSSLDMFLAGNSSPEPLDNILLAAFEFDIHQVI
KEFSIVSSNWWFVAHLTDLLDHCQLFQAHNLYFGANMREFLLLDYASGLFSHHSLWQLGV
DYFDYCPNLGHVYLELHMERVPLNTEKKALKALRICEKRQMTEQVRSICKTMAMQSLCNG
RLGSALSWSIRAKDAAFATLISDRFLKEYSERGNFTDLDLIDNLGSAMLLSDRLTFLGKY
REFHRMYSQEQFSEAASLLLSLMTARIAPCSFWLTLLLDALPLLEQKQVIFSAEQTYELM
RCLEDRMAAKLDSTSPDEIQKQDSVDSTKIEMLRLALARNLARAIVTEGALQE
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
atggaggagctggatgtggacccggcagagactcccattccaggtttagggcaacagaac
cggcacatagggttcagctggggacctggagatttacttctgtatgaaaccctttaccag
aaacaaggtagcgaaacagcagcccgctgtccttttatgtaccttgtgcgcagcgatgag
gacatctactcacctgtactgcgcaagctcttcaatgagtcgcacagcattttcgtcgga
cttcagaagagcgcggaggaaaacgccggcaaatctcgaaaggcacaattggtacaggtc
agtagaaattatcgttcggtgctccgagcctgcatggaggagatgcacgccctttctgag
tccaccagagaaccatctcaaaatacaaagtacatcagccagatatccatcttatctgcc
atggagctgagctggaacctttgcgagattctcttcatagagtcagctccagctggccct
ctcttgatacttctgctcgactgggtacgtctccatgtgtgtgaagtggacaacattgtc
caagatgttctcagaagtgaaaggcctacagagcacgagaagttctgggatggggttact
gggtatgttctgcaaggcaggatgaatgaggcacggcagttgttggctaaggaagcatca
tcgtctgtgagcgccagaagcatgtgtagggtgctggatgacctccttaagaaaatgccc
atgcttaatacggctggaacgcagacgctgacggagtttgagttgaaatggcagcattgg
cgggaggaatgcgagcgtcacctgcagaacggaacattctcttccaatccgcacatggaa
gtggtttgcagggtcttggtgggagatgaggaagtcatattagaaaagagggacctgatg
accacatggtatcacttcctggtgtcacgtctactcttcaaacacccaacggtgaaaccc
acagagttgcatttctatgcacagtcaagcttagatatgttcctggctggaaacagcagc
ccagagcccctggacaacattttgctggcggcgtttgaatttgacattcatcaggttatc
aaagagtttagcattgtttccagtaactggtggtttgtggctcatctgactgacctgctg
gatcactgccagttattccaggcccacaacctatattttggggccaacatgcgtgaattt
cttctgctagattacgcctctggtcttttctcccatcacagcctctggcaacttggtgtt
gactactttgactactgccctaatctaggccatgtctacctggagctccacatggaacgc
gtccctttgaataccgagaagaaagccctaaaggctctgcgaatctgtgagaagcgccag
atgacagaacaagtacgtagcatttgtaagactatggctatgcagtctctgtgcaatggt
cgcttaggatcagcattgtcctggagcatccgtgccaaagatgcggcttttgcaacacta
atctcagacaggttcctgaaagaatacagtgagagagggaactttacagacttggaccta
attgataatctgggctctgctatgctgctaagtgaccgcttgactttccttggaaaatac
agggaatttcacaggatgtacagccaggagcagttttcagaagctgccagcctgctgctc
tctcttatgactgctcgaattgctccctgctctttctggcttacccttctgttggatgcg
ctgccccttcttgaacagaaacaggttatcttttctgctgagcagacctatgagttgatg
cggtgcctcgaggacaggatggcagcaaagcttgactctacatccccagatgaaattcag
aaacaggattccgtcgacagtaccaaaattgaaatgctgcgactggccctggcccggaac
ctggcacgagcaatagtgacagagggggcactgcaagaatag
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