Xenopus tropicalis (tropical clawed frog): 448104
Help
Entry
448104 CDS
T01011
Symbol
srsf5a
Name
(RefSeq) serine/arginine-rich splicing factor 5 alpha
KO
K12893
serine/arginine-rich splicing factor 4/5/6
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03040
Spliceosome
xtr05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
448104 (srsf5a)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
448104 (srsf5a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
xtr03041
]
448104 (srsf5a)
Spliceosome [BR:
xtr03041
]
Common components
Common spliceosomal components
SR proteins
448104 (srsf5a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_3
RRM_occluded
RRM_5
Nup35_RRM_2
CoV_nucleocap
OB_RNB
Motif
Other DBs
NCBI-GeneID:
448104
NCBI-ProteinID:
NP_001005638
Xenbase:
XB-GENE-876886
UniProt:
F7B6E5
LinkDB
All DBs
Position
8:complement(109566462..109583949)
Genome browser
AA seq
262 aa
AA seq
DB search
MSGCRVFIGRLSPHARERDVEKFFKGYGRIREINLKNGFGFVEFDDHRDADDAVYELNGK
VLCNERVTIEHARNRRGRGGMMGGGGGGGGRYPNRFAYRQSNSGGPSRYGPPVRTEHRII
VENLSSRVSWQDLKDFMRKAGEVTYVDAHRSNRNEGVVEFASYTDMKNALDKLDGVELSG
RKIKLTEDSKKRRSRSRSRSHSRSRSKSKSRGSSKSASRSRSKSRTPERKYSQKNSSAEP
AQGLSPRAAKRQSRSSSADSRN
NT seq
789 nt
NT seq
+upstream
nt +downstream
nt
atgagtggctgccgcgtgtttattggaaggctgagcccccatgccagagagagagatgtg
gaaaaattctttaaaggatatggacgcatcagagaaatcaatttgaagaatggatttgga
tttgtggagtttgatgatcatagagatgctgacgatgctgtgtatgaattaaatggcaaa
gtactgtgcaacgaaagggtgacaattgagcatgcaaggaaccgcagaggaagaggtgga
atgatgggaggtggaggaggaggaggggggaggtatccaaatcgctttgcctatcgtcag
tccaatagtggtgggcccagtaggtatggaccacctgttcgtactgagcacagaattatc
gtagaaaacctctcctctcgtgtcagttggcaggatctcaaagatttcatgaggaaggcc
ggagaggtaacctatgtggatgcccatagaagtaacaggaatgagggggttgtggagttt
gcatcttatactgatatgaagaatgctttagataaactggatggtgtagaactaagtggt
cgcaaaattaaactaactgaagatagtaagaaacgcaggagtagatcaagatcaagaagc
cactcaaggtctcgcagcaaatctaaatctcgtggatcgtccaaatctgcaagcagatca
aggtccaaaagccgtacgcctgagagaaaatactcccagaaaaatagctctgcagagcca
gcacagggcttatcaccgcgcgctgccaagcgccagtccagatcaagttcagcagatagc
cgtaattaa
DBGET
integrated database retrieval system
