Xenopus tropicalis (tropical clawed frog): 448163
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Entry
448163 CDS
T01011
Symbol
smarcd1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
448163 (smarcd1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xtr03021
]
448163 (smarcd1)
03036 Chromosome and associated proteins [BR:
xtr03036
]
448163 (smarcd1)
Transcription machinery [BR:
xtr03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
448163 (smarcd1)
Chromosome and associated proteins [BR:
xtr03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
448163 (smarcd1)
PBAF complex
448163 (smarcd1)
GBAF(ncBAF) complex
448163 (smarcd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
Motif
Other DBs
NCBI-GeneID:
448163
NCBI-ProteinID:
NP_001004862
Xenbase:
XB-GENE-491104
UniProt:
Q6GL18
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All DBs
Position
2:148801972..148816644
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AA seq
508 aa
AA seq
DB search
MAARAGFQSVTPGGSGSATAALGPGTPGPAVRMGPAPGQGMYRSPMPGAAYPRPGMLPGS
RMTPQGPAMGPPGYGGSPAARPGMAQSGMDQSRKRPAPQQIQQVQQQAAQNRNHSAKKKK
MADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKRKLRIFIS
NTFNPAKSDAEDGEGTVASWELRVEGRLLEDAALSKYDATKQKRKFSSFFKSLVIELDKD
LYGPDNHLVEWHRTPTTQETDGFQVKRPGDMNVRCTVLLMLDYQPPQFKLDPRLARLLGI
HTQTRPVIIQALWQYIKTHKLQDPHEREFIICDKYLQQIFESQRMKFSEIPQRLHALLMP
PEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIAALDNKIHET
IETINQLKIQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVGNPEEERRAEFYFQPWA
QEAVCRYFYSKVQQRRQELEQALGIRNT
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgcgggctggattccaatcagtgaccccgggggggtccggttcagctacggct
gctctgggtcccggtacccctggcccagcggtaagaatgggccctgcccctgggcagggg
atgtaccgctctccaatgcctggagctgcttacccgagacctggaatgcttccaggtagc
cgaatgactcctcagggaccagcaatgggcccccctggttatggtggaagtccagctgct
cggccaggcatggcccaatcaggcatggaccagtctcggaaacgtcctgcaccccagcaa
atacagcaggtgcaacaacaggctgctcagaataggaaccatagtgctaaaaagaagaaa
atggctgataagatactacctcagaggataagggaactggtacccgaatctcaggcttac
atggatctgttagcgttcgagagaaagctggatcaaacaatcatgaggaaacggcttgat
attcaggaggctttgaagagaccaataaagcaaaagagaaaacttcggatcttcatttca
aatactttcaaccctgcaaaatcagatgctgaagatggagagggaactgttgcctcatgg
gagctgcgggtggagggccgtctccttgaggatgcggcactttctaaatatgatgctacc
aaacagaagagaaagttctcatctttttttaagtcactagttattgagctggataaagac
ctgtatgggccggataaccacctggtggagtggcacagaactcctacaacacaggagact
gatggttttcaggtgaagcgccctggggatatgaacgtgcgctgcaccgtgttactgatg
cttgactatcagccaccacaatttaaacttgatccccgactggctcgcctccttgggatt
cacactcagactcgtccagtcatcattcaagctctttggcagtacattaagactcacaaa
cttcaagaccctcatgaacgggagtttattatatgtgacaagtatctgcagcagatattt
gagtctcaaaggatgaagttttcagagatcccacagagattgcatgccctcctcatgcct
ccagaaccaattataatcaatcatgtcattagcgttgaccctaatgatcagaagaaaact
gcttgttatgacattgatgtagaagttgatgataccctaaaaactcagatgaactccttc
ctgttgtccactgcgagtcagcaggagatagctgctctagataacaagattcacgaaaca
attgaaactattaatcagttgaaaattcagagggaatttatgttgagctttgcccgtgac
cctcaaggatttattaatgactggttacagtcacagtgccgggacctcaaaacaatgact
gatgtggtaggtaatcctgaagaagaacgccgagctgagttttacttccagccatgggct
caggaggctgtgtgccggtatttctactccaaggtgcaacaaagacgtcaggagcttgaa
caggctctcgggatccgaaatacataa
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