Xenopus tropicalis (tropical clawed frog): 448177
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Entry
448177 CDS
T01011
Symbol
vcp
Name
(RefSeq) transitional endoplasmic reticulum ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04137
Mitophagy - animal
xtr04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
448177 (vcp)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
448177 (vcp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xtr03019
]
448177 (vcp)
03009 Ribosome biogenesis [BR:
xtr03009
]
448177 (vcp)
04131 Membrane trafficking [BR:
xtr04131
]
448177 (vcp)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
xtr04147
]
448177 (vcp)
Messenger RNA biogenesis [BR:
xtr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
448177 (vcp)
Ribosome biogenesis [BR:
xtr03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
448177 (vcp)
Membrane trafficking [BR:
xtr04131
]
SNARE
SNARE associated proteins
Others
448177 (vcp)
Autophagy
Aggrephagy
Other aggrephagy associated proteins
448177 (vcp)
Exosome [BR:
xtr04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
448177 (vcp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_5
AAA_33
AAA_2
TIP49
AAA_22
AAA_14
NPHP3_N
RNA_helicase
Vps4_C
AAA_28
nSTAND3
Parvo_NS1
Mg_chelatase
AAA_17
ATPase_2
IstB_IS21
AAA_18
AAA_7
ATPase
DUF815
ABC_tran
AAA_24
NB-ARC
TsaE
ResIII
NACHT
Sigma54_activat
Viral_helicase1
SLFN-g3_helicase
KAP_NTPase
Zot
DUF3944
Motif
Other DBs
NCBI-GeneID:
448177
NCBI-ProteinID:
NP_001005677
Xenbase:
XB-GENE-969573
UniProt:
Q6GL04
LinkDB
All DBs
Position
1:complement(212816176..212828583)
Genome browser
AA seq
805 aa
AA seq
DB search
MASGSDSKSDDLSTAILKQKSRPNRLIVDESINEDNSVVSLSQAKMDELQLFRGDTVLLK
GKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPID
DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDT
VIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRG
ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI
IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF
GRFDREVDIGIPDSTGRLEILQIHTKNMKLSDDVDLEQVANETHGHVGADLAALCSEAAL
QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIG
GLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI
SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRV
INQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRIAILKAN
LRKSPVAKDVDLDFLAKMTNGFSGADLTEICQRACKLAIRESIENEIRRERERQTNPSAM
EVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFPAGGQGG
AGPSQGAGGGSGGSHFNEEEDDLYG
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atggcttccggatccgattccaaatcagacgacctgtctacagcaatcctgaagcagaag
agccggcccaatcggctgattgtggatgaatccatcaatgaggacaacagtgtggtgtct
ctgtcccaggccaagatggatgagctgcagctctttaggggggacaccgtgctgctgaaa
gggaagaagaggagggaagccgtttgcatcgttctctcagatgacacctgttccgatgaa
aagatccgaatgaacagagtcgtccggaacaacctgagggtgcggcttggagatgttatc
agcattcagccgtgcccggatgtgaagtacggcaagcggatccatgtcctgcccatagac
gacacagtggagggcatcactgggaacctgtttgaggtgtatctcaagccttacttcttg
gaagcctaccggccaatcaggaaaggtgacattttcctggtgcgcggagggatgcgagca
gtggagttcaaagtggtggagactgatccctccccgtactgcattgtggcccccgatact
gtaatccattgtgaaggggagcccattaaacgtgaagatgaggaggagtccttgaatgaa
gtgggctatgatgacatcggcggctgcaggaaacagctggcccagatcaaagagatggtg
gaactgcctctcaggcacccggccctctttaaggctattggggtgaagcctcccaggggc
attctgctgtacggacccccaggcactggaaaaaccctcattgctagagctgtggccaat
gaaaccggagctttcttcttcctgatcaatgggcccgagatcatgagcaagttggccggc
gagtcggagagcaacctgcgcaaagcgtttgaggaggccgagaagaacgccccggccatc
atctttatagacgagctggacgccatcgcccccaagagagagaagacacacggagaagtt
gagcggcgcattgtctctcagctactgactctgatggacgggctgaaacagcgggcacac
gtcattgtcatggccgccaccaaccgacccaacagcatcgacccggcgctcaggcgattt
ggtcgcttcgacagggaggttgatatcggcatccccgactccaccgggaggctggaaatc
ctgcagatccacaccaagaacatgaagctttccgacgacgtggatctggagcaggttgca
aatgaaacccacggacacgtaggtgccgacttggccgctctgtgctcggaagccgcgctc
caggccatcaggaagaagatggacctcatagacctggaagatgaaaccatcgatgctgaa
gtgatgaactctttggccgtcaccatggatgactttaggtgggcgctgagtcagagtaac
ccctcggccctacgggagacggtggtggaggtgccgcaggtcacatgggaggatatcggt
ggcttggaagacgtcaagagggagctccaggagctggtgcagtatcctgtggagcatcca
gacaagttcctgaagttcggaatgaccccatcgaagggtgtgcttttctacgggcccccc
gggtgcggtaagactctgctggctaaggccattgccaacgaatgccaggccaacttcatc
tccatcaaagggccagaactgctcaccatgtggttcggagagtctgaggccaacgtcaga
gagatatttgacaaggctcggcaggccgctccttgtgtcctcttctttgatgaattggac
tccattgccaaggcccgaggcggcaacattggagatggtggtggagccgccgacagagtc
attaaccagatcctcacagagatggatggaatgtccacaaagaagaacgtcttcatcatt
ggagccaccaacaggccagatattatcgaccccgccatcttgcgtcccggccgtctggat
cagctcatttacatcccactgcccgatgagaagtcccgcattgccatcctgaaggccaac
cttaggaagtctcctgttgccaaggatgtggaccttgacttcctggccaagatgaccaat
ggtttctccggtgccgatctgactgagatttgccagcgtgcctgcaaactggccatcagg
gaatccattgagaatgagatccgaagggagcgagagaggcagaccaacccctcggctatg
gaagtggaagaagacgaccctgtaccggaaatccggagagaccactttgaagaagccatg
cgattcgcccgccgctccgtcagcgataacgacattcgcaaatacgagatgttcgcacag
acccttcagcagagcagaggattcggcagcttcagatttcccgccgggggtcaaggtgga
gccggtcccagccaaggagcgggcggaggcagcggcggcagccattttaacgaggaagaa
gatgatctgtatggttaa
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