Xenopus tropicalis (tropical clawed frog): 448414
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Entry
448414 CDS
T01011
Symbol
vps16
Name
(RefSeq) vacuolar protein sorting-associated protein 16 homolog
KO
K20180
vacuolar protein sorting-associated protein 16
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04140
Autophagy - animal
xtr04142
Lysosome biogenesis
xtr04148
Efferocytosis
xtr05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome biogenesis
448414 (vps16)
04140 Autophagy - animal
448414 (vps16)
04148 Efferocytosis
448414 (vps16)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
448414 (vps16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xtr04131
]
448414 (vps16)
Membrane trafficking [BR:
xtr04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
448414 (vps16)
Hops complex
448414 (vps16)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps16_N
Vps16_C
Reprolysin
TPR_ZFYVE26
Motif
Other DBs
NCBI-GeneID:
448414
NCBI-ProteinID:
NP_001004976
Xenbase:
XB-GENE-5856292
UniProt:
Q6DIM9
LinkDB
All DBs
Position
2:complement(180141414..180145129)
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AA seq
834 aa
AA seq
DB search
MDFYTANWYPMGSVYYRKFDCYRMEWDLRDGFRECLVAAGPYAGTVALMRNYCAKPGRPI
LEIYSAAGVLLSSIPWKSGQVVHLGWTLTQDLVCIQEDGTVLIYDIFCAFKRHFSLGSEV
KQNQVLEAKVFHTEYRTGIAILTGALKFTVASNIDDVKLRRLPEIPALRGPPTCWTVLFN
DRVPLVLAAVGPDLYLLDNTSCTAVTLPGMSPLAGSALQMAVSFNYKYLAVFTDTGYIWM
GTASLTDKLCEFSSDLRQAPKQMAWCIRPGSRNIALALMWEKLIFLVGRAREGVHFPLDE
PSFIVPELDGIRIVSSSTHEFLHEIPKVTEDIFKIASMAPGALLLEAQKEYEKESQKADD
YLREIKDQNHLSDAVENCIEAAGYEHAPEMQKSLLRAASFGKCFVEKYSPADFVTMCQDL
RILNAIHDYQIGIPLTMTQYKQLTIQVLLDRLVLRRLYPLALKICEYLKFSDFQGVSRIL
AHWACYKVQQKEKSDDEIAQAINQKLGDTLGISYSEIASRACECGRTELAIKLLEYEPKS
EDQVPLLLKMKRSNLALAKAIESGDTDLVYTVVTYMKNEFNRGDFFMTLQNHPVALSLYR
QFCKHQEPETLKDLYNQDDNHLELGNFYVRSSYGAEKRVEGRVAELQNAVEEYNKAKSEL
AARATEDQIKLLRNQRALQDKVDKPYLDFSLHDTVYNLILDGMHKKAEQLYKEFKIPDKR
YWWLKISALAEKEDWEELEKFSKSKKSAIGYLPFVEICMKHQNKVEAKKYIARVGIEQRV
KAFLLVGDLDQAAESAIEHRNEQEMNMVLSRCASAADNTIVEKINRAKSLILKK
NT seq
2505 nt
NT seq
+upstream
nt +downstream
nt
atggatttctataccgctaactggtacccaatgggcagcgtttattaccgtaagtttgat
tgctaccgcatggagtgggacctgagagacggcttcagggagtgccttgtggccgccggg
ccctacgccggcaccgtcgctctaatgaggaattactgtgccaagccgggccggcccatt
ctggagatttactctgccgccggcgtcctgttgtcctccatcccgtggaagagcggccag
gtggtgcacttgggctggaccctcacccaggacctggtttgtatccaggaggatgggacg
gtgcttatctacgacatattctgcgcattcaagcgccacttcagcctggggagcgaggtg
aaacagaaccaggtcctggaggccaaagtgttccacaccgagtacagaaccggcatcgcc
atcttaaccggagccttgaaattcaccgtcgcttccaacatcgatgacgtgaaactgcgc
aggttgccggaaataccggccctcaggggcccccctacctgctggactgtactgtttaac
gaccgagtgcctctagtcttggctgccgttgggccagatctgtacctgttggacaatacc
tcttgcaccgccgttacactgcccggaatgagccccctggccgggtcagctctgcaaatg
gccgtctcctttaattacaagtacctcgcagtcttcacagacaccgggtacatctggatg
gggacggcttccctgacggataaactgtgcgagttttcctccgatctacgacaggcgcca
aagcaaatggcttggtgtataaggcccggcagccgcaacattgcgctcgcactaatgtgg
gaaaaactcatattcctagtcggccgtgcccgcgagggcgttcacttcccgctggacgag
ccgtcgtttatagttcccgaacttgatgggatcagaatcgtatcttcctccacccacgag
tttctccacgaaataccgaaagtgaccgaggacatttttaaaattgcctccatggcgccc
ggagctcttttgctcgaagcccaaaaggaatatgagaaagagagccagaaagcggacgac
tatctgcgggagattaaggaccagaaccacctgtcggacgcagtggagaactgcatagaa
gccgcgggctacgagcacgcccccgagatgcagaagtctctcctcagagcagcttcattc
ggaaaatgctttgtggaaaaatattctcccgcggactttgtgactatgtgccaagatctc
cgtatcctcaacgccatccatgactaccagatcggtatcccgctgactatgactcagtac
aagcaactcaccatacaggttctgttggacagattagtcttacggagactttatcccctc
gctctcaaaatttgtgaatatctaaagttttctgatttccagggtgtcagtcggatttta
gctcattgggcttgttacaaggtgcaacaaaaggagaaatctgatgatgagatagctcag
gccattaatcagaagcttggagacaccctcggaatttcctactctgaaattgcctccagg
gcctgtgagtgtggtaggacggagttggccattaaactcttagagtacgaaccaaagtcg
gaagatcaagttccattgcttttaaagatgaagagaagcaacttagccctggccaaagcc
atcgagagcggggacacggaccttgtgtatactgtggttacttacatgaaaaacgagttt
aaccgaggcgacttctttatgacattgcagaaccacccggtggctttgagtttatacaga
cagttctgcaagcaccaagaacccgagacactgaaggacctttacaatcaggatgataat
catctggagctgggtaatttctatgttcgatccagttacggtgcagagaaaagggtggaa
gggcgggttgcggagctccaaaacgctgtagaggagtacaacaaagctaagagtgaactg
gcggccagggccaccgaggatcagatcaagctgctgaggaaccagcgggcactgcaggat
aaggtggacaagccgtacctggacttctcgctgcacgacaccgtttacaatctcatactg
gacggcatgcacaagaaagcagagcaactgtacaaagaattcaaaatccctgacaaaagg
tactggtggctcaaaatctctgctttggcggagaaagaggactgggaggagcttgagaag
ttctcgaaaagtaagaaatctgccatcggctacttgccctttgtggagatttgcatgaag
catcagaacaaagtggaagccaagaagtacatcgcccgcgtgggtatcgagcagcgggtc
aaagccttcctcttggttggggacttggatcaggctgccgaaagcgccatcgagcaccga
aatgaacaagaaatgaatatggtgctgtcccgctgcgcctcggccgctgataacaccatt
gtggagaagatcaaccgcgccaagtccctgatcctcaagaaataa
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