Xenopus tropicalis (tropical clawed frog): 448456
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Entry
448456 CDS
T01011
Symbol
cpsf3
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
448456 (cpsf3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xtr03021
]
448456 (cpsf3)
03019 Messenger RNA biogenesis [BR:
xtr03019
]
448456 (cpsf3)
Transcription machinery [BR:
xtr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
448456 (cpsf3)
Messenger RNA biogenesis [BR:
xtr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
448456 (cpsf3)
U7-dependent histone pre-mRNA processing factors
448456 (cpsf3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
448456
NCBI-ProteinID:
NP_001006770
Xenbase:
XB-GENE-972322
UniProt:
Q6DIH6
A0A8J0PE15
LinkDB
All DBs
Position
5:137804146..137819766
Genome browser
AA seq
692 aa
AA seq
DB search
MSVKRKAESAIPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDAL
PYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV
SNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVK
LLYTGDFSRQEDRHLMAAEIPNVKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRG
GRALIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKI
RKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVI
IAGYCVEGTLAKHIMSEPEEIATMSGQKLPLKMSVDYISFSAHTDYQQTSEFVRALKPPH
VILVHGEQNEMARLKAALIREYEDNDEVEIEVHNPRNTEAVTLNFRGEKLAKVMGLLADK
KPEQGQRISGILVKRNFNYHILCPSDLSSYTDLAMSTVTQKQAIPYTGPFNLLSCQLQQL
TGDVEEIEVNEKDALRVFKAVTVVRDAGMVYLEWVANPANDMYADTVITVILELQSNPKA
NKAVATRASKEVDMDAYRKRLEMMLQDIFGDDCVNCEDAGSITVTVDGKSAILSMETRTV
EYEEGIDEDETLREMVQQAAQRLYDALCPASL
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtgaaaaggaaagcggagagcgctatcccggccgaggagagtgaccagctgctc
attcggcccctaggcgctggtcaggaggtgggaagatcatgtatcattctggaattcaaa
ggaagaaagattatgctggactgtgggatccaccctggattagagggaatggatgctctc
ccatacattgacttgattgaccctgcagagattgatttgctccttataagtcatttccat
ctggatcattgtggggcccttccatggttcctgcagaagacgagctttaaggggcggaca
tttatgacccatgctactaaggctatatacagatggctgctgtcagattatgtcaaagtc
agtaatatctcagcagatgatatgctgtacacagagacagacctggaggaaagtatggac
aaaattgaaaccatcaacttccatgaagtgaaagaggtggcaggaatcaagttctggtgt
taccatgcaggacatgtccttggagctgccatgttcatgatagaaatcgctggagtgaag
ctcctttatacaggcgatttttccaggcaagaggacagacatttgatggcagcagaaata
ccaaacgtcaaaccggatatcctcatcattgaatccacatacggcactcacatccacgag
aagagagaagagcgagaggcgcgtttctgtaacactgtacacgatattgtaaatagggga
ggaagagccctcatccccgtctttgctttgggccgagcacaggagctcctgttgatttta
gatgagtactggcagaaccacccagagcttcatgacattccaatatactatgcatcgtcc
ctggctaagaagtgtatggcagtgtatcagacttacgtgaatgccatgaatgacaagatc
cgcaagcagatcaacataaacaatccatttgtttttaaacacatcagcaacttgaagagt
atggaccactttgatgacattggccccagtgtggtcatggcctcccctggaatgatgcag
agcggtctctccagagaactgtttgagagttggtgcacagataagagaaatggtgtgatt
atagctggctactgtgtggaagggacacttgccaagcatatcatgtctgagcccgaggag
atcgccaccatgtctgggcagaagctgccgcttaagatgtctgtggattacatttcattc
tcagcccacacagattaccagcaaaccagcgagtttgtccgggccctgaaacctcctcat
gtgatactggtgcatggggaacagaatgaaatggcaaggctaaaagctgctctcatacga
gaatacgaggacaatgatgaagtagagattgaggttcacaaccccaggaacacagaggcg
gtgacactgaacttcagaggagaaaagttggcaaaggtgatgggtttactggcagacaag
aagccagagcaaggacagaggatttcagggatcctggtgaagaggaactttaactatcac
atactttgtcccagtgacctctctagttatactgacttggccatgagcaccgtcacgcag
aaacaggccattccatatactggcccttttaaccttctgtcttgccagttacagcagctt
acaggggatgtggaagagattgaagtgaatgagaaagatgcactgagggtattcaaagct
gtcactgttgtgagggacgctgggatggtgtacctggagtgggtagcaaatccagccaat
gacatgtatgcagacaccgtaatcacagtcatcttggagcttcagtctaatccaaaagcc
aataaagctgtagccactagagcatctaaggaagtggatatggacgcctacaggaagagg
ctggagatgatgctgcaggatatttttggtgacgattgtgtgaattgcgaggatgccggc
agtatcacagtcactgtggatggaaagagcgccattttgtccatggaaacacggactgtg
gaatatgaggaaggaattgatgaggacgagaccctgcgggagatggtccagcaggcagca
cagagactgtatgacgccctttgcccagccagcctctaa
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