Xenopus tropicalis (tropical clawed frog): 448469
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Entry
448469 CDS
T01011
Symbol
taf5l
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
448469 (taf5l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xtr03021
]
448469 (taf5l)
03036 Chromosome and associated proteins [BR:
xtr03036
]
448469 (taf5l)
Transcription machinery [BR:
xtr03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
448469 (taf5l)
Coactivators
SAGA/TFTC/STAGA complex
448469 (taf5l)
Chromosome and associated proteins [BR:
xtr03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
448469 (taf5l)
STAGA complex
448469 (taf5l)
TFTC complex
448469 (taf5l)
SAGA complex
448469 (taf5l)
SLIK complex
448469 (taf5l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
EIF3I
TFIID_NTD2
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
Beta-prop_SCAP
Beta-prop_RIG_2nd
NBCH_WD40
RMC1_N
Beta-prop_SPT8
Beta-prop_HPS5
Beta-prop_Vps41
Beta-prop_WDR19_1st
WD40_RFWD3
Beta-prop_EIPR1
Beta-prop_DCAF4
Ge1_WD40
PROPPIN
PEP5_VPS11_N
WD_LRWD1
Nbas_N
TetR_C_22
Motif
Other DBs
NCBI-GeneID:
448469
NCBI-ProteinID:
NP_001006779
Xenbase:
XB-GENE-998039
UniProt:
Q6DIG0
LinkDB
All DBs
Position
5:52955441..52963198
Genome browser
AA seq
588 aa
AA seq
DB search
MKRVRAEQIQLAVTCYLKRRHYIDIEGSLKQGLRLCQTAEEMAANLTVQAESSCTNAVSS
VPCSPDAHQYEVQFARLRNFLSDADSPHSQEVTTLLYPLFVYLHLDMVQNSLKSAVDSFY
SRFHGMFMQHPGQRDIVEQLQTTMTMQDIHSNCKLRAFLDNKYVVCLQEDSYHYLLRFLQ
SDNNTALCKALALHIQLDVQPVKRTEYQLYNSMGSSSRGENNSLDQSDVPTPILQNEAAL
DQLQDCIKKVKDGPPSLTTISFYAFYNTEQLLNTAEISPDSRLLAAGFDSSCVKLWSLKS
KKLKAEPHRVDVSRIRLACDVLEEEEDEQAGTEMKILRGHSGPVYRTCFLSDSSGLLSCS
EDTSIRYWNLENFTNTVLYQGHAHPVWDLDVSPCSLFFASASHDRTGRLWCFDRTFPLRI
YAGHLSDVDCIKFHPNSNYLATGSTDKTVRLWSTQQGNSVRLFTGHRGPVLALAFSPNGK
YLASAGEDQRLKLWDLASGTLYKELRGHTDNISSLTFSPDSSLIASASMDNSVRVWDIRN
SYCNTPSDGSSSELVGVYTGQTSNILSVQFMACNLLMVTGIAHENQEH
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgagtacgtgcagaacagattcagttggctgtaacgtgctacctcaagaggcgt
cactatatagatatcgaagggtccctgaaacaaggattgagactttgccagactgccgag
gagatggcagctaatctgacagtccaagcagaatccagctgtaccaatgcagtgtcttca
gttccctgcagtcctgatgcacatcagtatgaagtgcagtttgcaaggctaaggaatttc
ctttcagatgcagattcccctcatagccaagaggttacaacactgctttatcctttgttt
gtgtacctccatttggacatggtccaaaacagcctgaaaagtgcagtggatagcttctac
agtcgctttcatgggatgttcatgcaacaccctggtcagcgggacattgttgagcaactc
caaaccaccatgacaatgcaagatatccactccaattgcaaactgcgagcctttcttgat
aacaaatatgtggtctgccttcaggaggacagctaccactaccttttacgcttcctccaa
agtgataacaacactgctttgtgtaaggcgcttgctcttcacattcaattagatgtacag
ccagtaaagcggacagagtatcagctgtacaacagcatgggttcatcctctcgaggagag
aacaacagccttgaccaatccgatgtgccgactccaattctgcagaatgaggcagctcta
gatcagttgcaagactgcataaagaaagtaaaagatggtccaccatcactcacaactatc
agcttttatgctttctacaacaccgagcagcttctaaatactgctgaaatttctccagat
agcagactactagctgctggttttgacagttcctgtgtgaaattatggagcttaaagtct
aaaaagctgaaagctgaaccacacagagtagatgtgtcccgtatacggcttgcatgtgat
gtcttggaagaggaggaagatgaacaagctggcacagaaatgaagatacttagaggacac
agtggaccagtgtatagaacctgttttctgtcagacagttcaggccttttatcctgctca
gaggatacatccatacgatactggaatcttgaaaactttaccaacactgtgttgtatcag
ggtcatgcacatccagtttgggatttggatgtaagtccttgcagtctgttttttgccagc
gcatctcatgaccgcactggtagactctggtgttttgaccgaacatttccactgaggata
tatgctggccacctgtccgatgttgattgcataaagttccaccccaattccaattacctt
gccacaggatccactgacaaaactgtgcgactgtggagcactcagcagggaaattccgta
agacttttcacaggacatcgaggtccagttctagctcttgctttttcgccgaatgggaag
tatctggcctccgcaggtgaagatcagcgtctgaagttatgggacttggcatctggcaca
ctatataaggagctccgaggacatacagacaatataagcagtttaacattcagtccagac
agcagcttgatagcttcagcatccatggacaattctgttcgtgtttgggatattcgaaat
tcctactgtaacaccccctcagatggttcttctagtgagctagttggtgtttatactggg
caaacaagcaacattttgagtgtgcagtttatggcatgtaacctactaatggttacaggg
attgcccatgagaatcaagaacattaa
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