Xenopus tropicalis (tropical clawed frog): 448484
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Entry
448484 CDS
T01011
Symbol
ncbp1
Name
(RefSeq) nuclear cap-binding protein subunit 1
KO
K12882
nuclear cap-binding protein subunit 1
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03013
Nucleocytoplasmic transport
xtr03015
mRNA surveillance pathway
xtr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
448484 (ncbp1)
09122 Translation
03013 Nucleocytoplasmic transport
448484 (ncbp1)
03015 mRNA surveillance pathway
448484 (ncbp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xtr03019
]
448484 (ncbp1)
03041 Spliceosome [BR:
xtr03041
]
448484 (ncbp1)
Messenger RNA biogenesis [BR:
xtr03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
448484 (ncbp1)
Spliceosome [BR:
xtr03041
]
Common components
Common spliceosomal components
Cap binding complex
448484 (ncbp1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G_like_2
MIF4G
MIF4G_like
Motif
Other DBs
NCBI-GeneID:
448484
NCBI-ProteinID:
NP_001006788
Xenbase:
XB-GENE-5841194
UniProt:
Q6DIE2
LinkDB
All DBs
Position
1:107413976..107437318
Genome browser
AA seq
791 aa
AA seq
DB search
MSRRRHSDENDGGPHHKRRKTSEPLEIEDRLESLICRVGEKSTSSLESNLEGLAGVLEAD
LPNYKSKILRILCSVARTLPEKMTVYTTLVGLLNARNYNFGGEFVEAMIRHLKETIKLNA
YNEAVYLVRFLCDLVNCHVIAAPSMVAMFESFVGVTQEEDIPQVRSDWYVYAVLSSLPWV
GKELYEKKDVEMDRILSQIEAYLKQRQKLHVSILQVWSAEKPHPQEEYLDCLWAQIQKLK
KDRWQERHILRPYLAFDSVLCEALQHNLPPFTPPPHTEDSVYPVPRVVFRMFDYTDAPEG
PVMPGSHSVERFVIEENLHCILRSHWRERKTCAAQLLSYPEKNKIPLNYHIVEVIFGELF
QLPNPPHLDVMYTTLLIELCKLQPGSLPQVLAQASEMLYTRLDTMNTICIDRFINWFSHH
LSNFQFRWNWEDWSDCLSQDLDKPKPQFVREVLEKCMRLSYHQRILDIVPAAFSALYPAS
PSCVFKYGDESNSALPGYSVAVALTNAIKNKASDKEIFNILKDIPNPNQDDDDDEGISFN
PLKIEVFVQTLLSLASKSFSHSFSALAKFHDIFKALSESDEGKLHILRVVYDIWKNHPQM
IAVLVDKMIRTQIVDCAAVANWIFSPELSRDFPRFYIWEILHSTIRKMNKHVQKIQKELE
DMKLRLAKQHKHRDSDDNDEDSGRKDGPLEEQIERLQEKVESAQSEQKNLFLVIFQRFIM
ILTEHLVRCETGGIDVNTAWYKNCRERLQQIFLQHHQIIQQYMVTLENLLFTAELDHHIL
TVFQQFCALQS
NT seq
2376 nt
NT seq
+upstream
nt +downstream
nt
atgtccaggaggaggcacagtgatgagaatgatggaggtccacatcataaaaggcgaaaa
acatctgaaccccttgagattgaagaccgattggaatccttgatatgcagagttggagaa
aagagtacatcctcactggaaagcaacctagaaggtttggctggtgtcttggaagctgat
ctgcctaactataaaagcaagatcttaagaattctttgttcagttgcccgaacgctgcct
gaaaaaatgactgtgtacactacattagttgggttacttaatgccagaaactacaatttt
ggtggtgaatttgtggaggctatgatacgtcatctcaaggagacaattaaactgaatgct
tacaatgaagctgtatatttagttcgttttctttgtgaccttgtaaattgccatgtaatc
gcagctccatcaatggtagccatgtttgaaagctttgttggagtcactcaggaagaagat
attccccaggtgcgaagtgactggtatgtatatgctgttctttcttcactgccatgggtt
ggaaaagaattatatgagaaaaaagatgttgagatggaccgtattttatcccaaattgaa
gcttacctgaagcaacgtcaaaagctccatgtatctattctacaagtatggtcagcagaa
aaaccacacccacaggaagagtatttagactgcttgtgggcacaaatacagaagttaaaa
aaggaccgttggcaagaaagacacatcctacgtccatacctagcctttgacagcgttttg
tgtgaagctctgcagcacaatcttccaccatttacaccaccacctcatactgaagattct
gtgtacccagtgccaagagttgttttcaggatgtttgactacacagatgcacctgagggt
ccagtcatgcctggaagccattctgtagagcgctttgttatagaagaaaatctgcattgc
atacttagatcacattggcgtgaaaggaaaacatgtgctgctcagctgttaagctacccg
gagaagaacaaaattcctttgaactatcacatagttgaggtgatctttggagagctgttt
cagttaccaaatccaccacatcttgacgtcatgtatactacacttcttattgaactttgc
aaactgcagcctggatcgttgccacaagtgcttgcacaagcctctgaaatgttgtataca
cgtctggatacgatgaacacaatttgtatagacaggtttataaactggttttcacaccat
ctaagtaattttcagttccggtggaactgggaggattggtcagactgtctttctcaagac
ttagataaaccaaaaccacaatttgttcgtgaagtgctagaaaaatgcatgaggctttcc
taccaccagagaatattggacattgtacctgcagcgttttctgcattatatccagccagt
ccctcatgtgtgtttaaatatggtgatgagagcaacagtgctttgccgggatattctgtt
gctgttgcattaacaaatgcaattaaaaataaagcaagcgataaagaaatttttaacatt
ttaaaagatatccctaatcctaatcaagatgacgatgatgatgaaggaatcagctttaat
ccactcaaaattgaggtttttgtacagaccctgcttagtctagcatcaaagtcctttagt
cactcctttagtgctcttgcaaagtttcatgacatctttaaagcattatcagagagtgat
gaagggaaacttcatattctaagagttgtttatgatatctggaaaaatcacccacagatg
attgctgtgttagtggataagatgatacgaacacaaattgttgactgtgcagcagtggca
aactggatcttctccccagagttatcacgtgacttccccaggttttatatatgggaaatc
ttgcactctacaattcggaaaatgaataaacacgtccagaaaatccaaaaagaactggaa
gacatgaagctaaggctagctaaacagcataaacatagagacagtgatgacaatgatgaa
gacagtggcagaaaggatggtcctctagaagaacagattgagcggctgcaagagaaagtt
gagtctgctcagagtgaacaaaagaacttgttccttgtcatattccagaggtttatcatg
atccttacggaacacttagttcgctgtgaaactggaggcattgatgtgaatactgcttgg
tataagaactgcagagagaggcttcagcagatattcctacagcatcatcagataatccag
cagtatatggtgaccctggagaacctcttgtttacagcagaattggaccatcacatcctg
accgtcttccagcagttttgtgcattacagtcttaa
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