Xenopus tropicalis (tropical clawed frog): 448543
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Entry
448543 CDS
T01011
Symbol
smarcb1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03082
ATP-dependent chromatin remodeling
xtr03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
448543 (smarcb1)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
448543 (smarcb1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
xtr01009
]
448543 (smarcb1)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xtr03021
]
448543 (smarcb1)
03036 Chromosome and associated proteins [BR:
xtr03036
]
448543 (smarcb1)
Protein phosphatases and associated proteins [BR:
xtr01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
448543 (smarcb1)
Transcription machinery [BR:
xtr03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
448543 (smarcb1)
SWI/SNF complex
448543 (smarcb1)
Chromosome and associated proteins [BR:
xtr03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
448543 (smarcb1)
PBAF complex
448543 (smarcb1)
SWI/SNF complex
448543 (smarcb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
DUF1679
Motif
Other DBs
NCBI-GeneID:
448543
NCBI-ProteinID:
NP_001006819
Xenbase:
XB-GENE-493598
UniProt:
Q6DFM1
LinkDB
All DBs
Position
1:complement(153149167..153171077)
Genome browser
AA seq
378 aa
AA seq
DB search
MIMALSKTFGQKPVKFQLEEDGEYYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEERK
KIVASSHGKKYHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTYLREQKAKR
NSQWVPTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENAAQSEVLV
PIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLAFVPAIASAIRQQIES
YPTDSILEDQSDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGLGGEF
VTTIAYSIRGQLSWHQKTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAEMEKKIRD
QDRNTRRMRRLANTAPAW
NT seq
1137 nt
NT seq
+upstream
nt +downstream
nt
atgatcatggcgttaagtaaaacgtttggccaaaagccagtgaaatttcaattggaagag
gatggagaatactacatgataggatccgaggtgggaaattacttgcgcatgttcagggga
tcattatataaacggtacccttccctttggagacggttggcaacagtagaagagaggaag
aaaatagtagcgtcttctcatggaaagaaatatcatggatataccactttagctaccagt
gttactctcttaaaagcttcagaagttgaagagatccttgatgggaatgatgagaaatat
aaagcagtctctattagcacagaaccaccaacctacctcagggagcaaaaggcaaagcga
aatagccagtgggttccaactctacccaacagctcccaccacctggatgcagtgccttgc
tctactactataaacaggaatcgtatgggccgagacaagaaaaggacatttccactgtgc
tttgatgaccatgatccagcagtcattcatgaaaatgctgctcagtcagaagtcctggtt
cccattcgattagacatggaaattgatgggcagaagcttcgagatgcctttacgtggaac
atgaatgagaagttgatgactccagaaatgtttgctgaaattctctgtgatgaccttgac
ttaaatcctctggcttttgttcctgccattgcttcggctatccgccagcaaatagaatca
tatccaactgacagcatcctggaagatcaatctgaccagagggtcatcatcaagctcaat
atccatgttggaaacatttctttggtagaccagtttgagtgggacatgtccgaaaaggaa
aattccccagaaaaatttgctctaaagttatgctcagaacttggacttggtggggagttt
gttactactattgcttacagtattcgagggcagctcagctggcatcagaagacatatgca
ttcagtgaaaacccactgccgacagtagagattgctattcgaaatacaggcgatgctgac
cagtggtgccccctcctggagaccctcactgatgccgaaatggagaagaagatccgggac
caggaccggaacaccaggcgtatgagacgtcttgccaacactgcaccggcttggtaa
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integrated database retrieval system
