Xenopus tropicalis (tropical clawed frog): 448648
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Entry
448648 CDS
T01011
Symbol
ctr9
Name
(RefSeq) RNA polymerase-associated protein CTR9 homolog
KO
K15176
RNA polymerase-associated protein CTR9
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xtr03021
]
448648 (ctr9)
Transcription machinery [BR:
xtr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
PAF1 complex
448648 (ctr9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_19
TPR_2
TPR_14
TPR_16
TPR_CcmH_CycH
TPR_8
TPR_17
TPR_12
TPR_10
TPR_11
TPR_7
TPR_6
ARM_TT21_5th
TPR_Slam
ARM_TT21_4th
ANAPC3
PknG_TPR
TPR_EMC2
Motif
Other DBs
NCBI-GeneID:
448648
NCBI-ProteinID:
NP_001005076
Xenbase:
XB-GENE-5946075
UniProt:
Q6DEU9
LinkDB
All DBs
Position
4:5703054..5721319
Genome browser
AA seq
1172 aa
AA seq
DB search
MSRGSIEIPLRDTDEVIELDFDQLPEGDEVISILKQEHTQLHIWIALGLEYYKQVKTEDF
VKLLEAARIDGNLDYRDHEKDQMTCLDTLAAYYVQQARKEKNKDNKKELITQATLLYTMA
DKIIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSPNNIPALLGKACISFNKKDYR
GALAYYKKALRTNPGCPAGVRLGMGHCFVKLNKLDKARLAFGRALDLNPTCVGALVGLAV
LELNNKEADSIKNGVQLLSKAYTIDPSNPMVLNHLANHFFFKKDYSKVQHLALHAFHNTE
VEAMQAESCYQLARSFHVQEDYDQAFQYYYQATQFAAASFVLPFFGLGQMYIYRGDKENA
SQCFEKVLKAYPNNYETMKILGSLYAASDDQEKRDIAKSHLKKVTEQYPDDVEAWIELAQ
ILEQTDIQNALSAYGTATRILQEKVQADVPPEILNNVGALHFRLGNLGEAKKYFLASLDR
AKAEAEHDEHYYNAISVTTTYNLARLYEGLCEFHESEKLYKNILREHPNYVDCYLRLGAM
ARDKGNFYEASDWFKEALQINQDHPDAWSLIGNLHLAKQEWGPGQKKFERILKQPSTQND
TYSMLALGNVWLQTLHQPTRDREKEKRHQDRALAIYKQVLRNDSKNLYAANGIGAVLAHK
GYVREARDVFAQVREATADISDVWLNLAHIYVEQKQYISAVQMYENCLRKFYKHQNTEVL
LYLARALFKCGKLQECKQILLKARHVAPNDTVLMFNVALVLQRLATLVLKDEKSNLKAVL
NAVKELELAHRYFNYLSKVGDKMRFDLALAASEARQCSDLLSQAQYHVARARKQDEEEKE
LRAKQEQEKEILRQKLIKEQEEKRLKEIEEQKKLLEQRAQYVEKTRNLLNFTGEMETPKE
KKQRGGGGGGGGRRSKKNGEFDEFVNDDSDEDLAPRKKKRKKGGGSSGSGGEQGEGGEEG
EGGEKKKKKRRKRPQKGGDGSDDDEDQAPQPKKRQPKKREKPAKFERTPPSMKGKIKSKA
IISSSEDDSDEDKLKIADEGHGRGSNSDSDEGPRTQAKKRIMSDSDSDNANKSGSGAGSP
QKSPQSDGDSDNNAWARKRRRQDSGSDNDSAQSRRSSGGSDNESRAASRSPESQRGSDRG
SDNEGSARASPNESEQEASNNEKSDRGSDDSD
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcggggttctatagagatccctctccgggacacggatgaggtcattgaacttgac
tttgatcagttaccggagggggatgaagttatcagtatcctgaagcaggaacacacccag
ctgcacatatggatcgctctagggttggagtattacaagcaggtcaagacggaagacttt
gtgaagctgctggaagcggctcgtatcgatggcaacctagactaccgggaccacgaaaaa
gaccagatgacttgcttggacaccttggccgcttattatgtgcagcaggcgcgcaaggag
aagaacaaggacaacaagaaggagctgatcacccaggccaccctcctctacactatggcc
gataagatcatcatgtacgaccagaaccacctgttgggaagagcctgcttctgcctgctg
gagggagacaagatggaccaggccgatgcccagtttcatttcgtgttgaaccagtcccct
aacaatatcccagctctgctcggcaaagcctgcatttcattcaacaagaaggattacagg
ggagccctcgcctactataagaaagcccttaggaccaacccgggttgccctgcgggcgtc
cggcttggcatgggccattgctttgtgaagctcaacaaactggataaagctcgcctggcg
ttcggacgggcgctggatctgaacccaacgtgtgtcggcgcattggtcgggttggccgtg
ctggaactcaacaacaaagaggccgattccatcaaaaacggagtccagttgctctccaag
gcttacaccatcgatcccagcaaccctatggtcctcaaccatttggccaaccactttttc
ttcaagaaggattacagcaaagtgcagcacttggctcttcacgcgtttcacaatacagag
gtagaagccatgcaggcagagagctgctaccagctggcccggtcgtttcatgtgcaggag
gattacgaccaggccttccagtattattaccaggccacgcagttcgcagcggcctccttc
gtgctgcctttcttcggtttggggcaaatgtacatttacagaggggacaaggagaacgcc
tcccagtgcttcgagaaggtgctcaaggcctaccccaacaactacgagaccatgaaaatc
cttggttcgctctacgcggcctctgacgaccaagagaagcgggacattgccaagagccac
ctgaagaaggttacagagcagtaccctgatgatgtagaagcctggattgaattggctcag
atcttggaacagacggacattcagaacgccctgtcggcctatggaaccgccacgcggatc
ttgcaggagaaagtccaagcagacgttccgccggagatccttaataacgtgggtgccctc
cacttccgactgggaaacctgggagaggcaaagaaatactttctggcttcgctggaccgg
gctaaggccgaagccgaacacgacgaacattactacaacgccatctccgtcaccaccacc
tataacctcgccaggctgtacgagggtctctgtgagtttcacgagtcggagaagttgtac
aagaacattctgcgagagcatcccaactatgtggattgttacttgcgccttggagccatg
gccagagacaaagggaatttctatgaggcttctgattggtttaaagaagccctgcagatt
aatcaagatcatccagatgcctggtccctgattgggaaccttcatttggcgaagcaggaa
tggggccccgggcagaagaagtttgagagaattctgaaacagccatcgactcagaacgac
acctactccatgttggctctgggcaacgtgtggctgcagacgctacaccagcccacgcga
gaccgcgagaaggaaaaacgccatcaggacagagcgctcgctatttataaacaagtgctg
agaaacgactccaagaacctgtacgcggccaacggcatcggggctgtgctggcacacaaa
gggtacgtccgagaggcgcgggatgtgtttgcccaagtcagagaagccacggccgatatc
agcgacgtttggttgaacctggcgcatatctacgtggagcagaaacagtacatcagtgcc
gtgcaaatgtatgagaattgcctgcggaagttctacaaacaccagaacacagaggtgctg
ctgtacttggctcgggctctgtttaaatgtgggaaactgcaggagtgcaaacagattctg
ctcaaggctcggcatgtggcccctaatgacaccgtcctgatgttcaacgttgccctggtg
ctacagagactggcaactttagtgttaaaggacgagaagagcaacctgaaggcggtactg
aatgctgtgaaggagctggagctggcgcacagatatttcaactacctgagcaaagtcggg
gacaagatgaggttcgatttggcccttgcagcgtccgaagcccggcagtgctctgatttg
ctgagccaggcccaataccacgtggcgcgggcgcgcaagcaggacgaggaggagaaagag
ctccgtgccaagcaagagcaggagaaggaaatcctacggcagaagctcatcaaggaacag
gaagagaagcgcttgaaggagatcgaggagcagaagaagctgctggagcagagagctcag
tacgtggagaagaccaggaacttgctgaacttcaccggagagatggaaactcccaaggag
aagaaacagcggggaggcgggggcgggggcggcggaaggagatccaaaaagaacggggag
ttcgatgagtttgtaaatgacgactctgacgaggatctggctccccggaagaagaagaga
aagaagggcggcggcagcagcggctccggcggggaacaaggggaaggcggagaggaggga
gaaggcggagagaagaagaagaagaagaggaggaagaggccccaaaaaggaggcgacggg
tccgacgatgatgaagatcaagctccgcagcctaagaaacgtcagccgaaaaagagagaa
aagccggccaaatttgagcgcaccccgccttccatgaaagggaagatcaaatcgaaggcc
attatatcctccagcgaggatgactccgatgaagataaacttaagatcgcagacgaaggc
cacgggcggggcagcaacagcgactccgacgagggtcccaggacccaggccaagaagcgc
atcatgtccgacagcgactccgacaacgctaacaagtcgggcagcggcgccggcagcccc
cagaagtctccgcagtcggacggcgattccgataacaacgcctgggccagaaaaaggagg
cggcaggattccggttctgacaacgattcggcccaatccaggagaagctcggggggctcc
gacaacgaatcccgagccgcgtcgcgcagcccagagtcacagagggggtcggacaggggg
tctgacaacgagggctcggccagagcctcccccaacgaatcggaacaagaggcctcgaat
aacgagaagtcggaccgcggctcggatgatagtgattaa
DBGET
integrated database retrieval system
