Xenopus tropicalis (tropical clawed frog): 493207
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Entry
493207 CDS
T01011
Symbol
prdm1
Name
(RefSeq) PR domain zinc finger protein 1
KO
K24501
PR domain zinc finger protein 1 [EC:2.1.1.-]
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xtr03000
]
493207 (prdm1)
Transcription factors [BR:
xtr03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
493207 (prdm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PRDM2_PR
zf-H2C2_2
zf-C2H2
SET
zf-C2H2_4
C2CH-3rd_BIRD-IDD
Zf-C2H2_ZNF451_C
zf-C2H2_6
zf-C2H2_jaz
zf-C2HE
zf-met
B129_C2H2-zf
Cpxcr1_C
Motif
Other DBs
NCBI-GeneID:
493207
NCBI-ProteinID:
XP_002937203
Xenbase:
XB-GENE-853254
UniProt:
F6RF85
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All DBs
Position
5:complement(79507411..79524423)
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AA seq
784 aa
AA seq
DB search
MKMDMEGIDMTLWSETEFEEKCTYIVKDHSSDSSSEGSNVAQAQASLPRNLLFKYASGCK
EVIGVVSKEYIPKGTRFGPLVGEIYTNDTVPKNANRKYFWRIYSNGEFQHFIDGYNEDKS
NWMRYVNPAHSLQEQNLAACQNGMNIYFYTIKPIPANQELLVWYCRDFADRLHYPTSGEL
VVNLQQSLTIREEKRKELTQQKNTPKKEHSVKEILRDTTSHLKHKDNLLSSMSAITPEKE
KVDVHKNCSPERTFFPRVVYPFPSHIHEDYLKASVGYNMDRQNYLMHSPIQPSTTPSPSS
RSSPDQSFKSSSPHSSPGSAVSPHHPLQDHKEFYPFINRPYNTEGLGSFPTYAPPTSHLP
PFVSSYNSTYSKYLLPPYGIGCNGLNSLNNINAINNFNPFSRMYPVYSSMLAGGSLPHHL
LTHAALPGSLPHEGGRRLLQPELPRDFLIPAPNSAFSITGAAASMKDKQSSPTSGSPTAG
TAASLEHIMQPKPTSAVMSTSSEEAINLIKSKRNMTGYKTLPYPLKKQNGKIKYECNVCS
KTFGQLSNLKVHLRVHSGERPFKCQTCNKGFTQLAHLQKHFLVHTGEKPHECQVCHKRFS
STSNLKTHLRLHSGEKPYQCKLCPAKFTQFVHLKLHKRLHTRERPHKCIHCHKSYIHLCS
LNFHMKGNCPVSPRLGVSREDLNRMNEEIEKFDISDSADRLDDMEDMDMSPAVEKEIMTL
LRREIDGASMKMSVSRNVGNNGLLTSGCNFYDRSDAVVTKLPLSSPLPLLPVKVKQESID
QMDS
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatggatatggaaggaattgatatgacgttgtggtcagagactgaatttgaagaa
aagtgcacatatattgtgaaggatcactcctcggacagcagctcagagggcagtaatgta
gctcaggcacaagcatctttgcccaggaatctgcttttcaaatatgcatcaggatgcaaa
gaggtgattggagtagtaagcaaagagtacataccaaaaggaacacggttcggaccactt
gtaggggaaatctacacaaatgacactgttccaaagaatgcgaaccgaaaatatttttgg
cggatctattcaaatggtgaatttcagcacttcatcgatggttacaatgaagataagagc
aactggatgcgctatgtcaacccagcacactctcttcaagagcaaaaccttgccgcctgc
cagaatggcatgaacatctatttttacaccattaagcctataccagccaaccaggaactt
ctggtgtggtattgccgggactttgctgacagacttcactatcctacttctggagaactt
gtagtgaatctccaacaaagcctgaccattagagaggagaaaaggaaagaattgactcag
cagaaaaacactccaaaaaaggagcacagcgtgaaagaaatcctaagggatacaacaagc
cacttgaaacacaaggacaatctactgagctctatgtctgcaatcaccccagaaaaagaa
aaagtggatgtgcataaaaactgtagccctgaaaggactttcttccctagggtagtttac
ccattcccctctcacattcatgaagactatttaaaggcatctgtaggctataacatggat
agacaaaattatctgatgcattcaccaattcagccatccacaacaccaagtccttcatca
agaagtagtcctgaccaaagttttaaaagttcaagtcctcacagtagccctggatcagca
gtttcacctcatcatccactgcaagatcacaaagaattctacccattcatcaacagacca
tataatactgaaggtttggggtcatttccaacttatgcacccccaacaagtcacctgcct
ccatttgtatcctcctacaattcaacgtattctaaatatttattaccaccatatggcatt
ggctgcaatggactaaattcattgaacaatattaatgctattaataatttcaaccccttc
tcaagaatgtacccagtttacagcagtatgctagcgggaggaagcctccctcaccatttg
ctaacccatgctgccctccctggttccttaccacacgagggaggacgtagattgctgcaa
cctgagctgccacgagacttccttattcctgcacccaatagtgccttctccatcacaggt
gctgctgcaagcatgaaagacaagcagagcagtcccacaagtggatcaccaactgctggc
acagctgcatccttggagcacataatgcaacctaaacctacctcagcagtgatgtccaca
agcagtgaggaagccatcaatctcattaagagcaaaaggaatatgactggttataagact
ctcccatacccactgaaaaaacaaaatggaaagatcaaatatgagtgtaatgtttgctca
aaaacatttggacaactctcaaacctcaaggtgcatcttcgggtacacagtggggagcga
ccatttaaatgtcagacttgcaacaaaggattcactcagctggcgcatttacagaagcac
tttttggtacacacaggggagaaacctcacgaatgtcaggtttgtcataagcggttcagc
agcacaagcaatcttaagacccacttacgactgcactctggagagaagccctaccagtgc
aagctgtgccctgcaaagtttactcaatttgttcatctcaaactgcacaaacgtcttcac
acaagagaaaggccacacaaatgcattcattgccacaagagctacatccatctctgtagc
ctcaacttccatatgaaaggcaattgccctgtatctccaaggttgggggtgtctcgggaa
gacctgaaccgaatgaatgaagaaattgaaaagtttgacatcagtgacagtgcagaccgg
ttagatgatatggaagatatggacatgtctcctgctgtggagaaagaaataatgactctt
ctcaggagagagatagatggtgcaagtatgaaaatgtctgtctcaaggaatgtgggcaat
aatggacttctcacgtctggttgcaacttttatgaccgatctgatgcagtagtaacaaag
ttgcctcttagctctccactacctctgttacctgtgaaggtcaaacaagaatctatcgat
caaatggactcttaa
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