Xenopus tropicalis (tropical clawed frog): 493287
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Entry
493287 CDS
T01011
Symbol
htt
Name
(RefSeq) huntingtin isoform X2
KO
K04533
huntingtin
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xtr03019
]
493287 (htt)
04131 Membrane trafficking [BR:
xtr04131
]
493287 (htt)
03029 Mitochondrial biogenesis [BR:
xtr03029
]
493287 (htt)
Messenger RNA biogenesis [BR:
xtr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
493287 (htt)
Membrane trafficking [BR:
xtr04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
493287 (htt)
Mitochondrial biogenesis [BR:
xtr03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
493287 (htt)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Htt_C-HEAT
Htt_N-HEAT
Htt_bridge
Htt_N-HEAT_1
HEAT
HEAT_2
HEAT_EF3_N
Motif
Other DBs
NCBI-GeneID:
493287
NCBI-ProteinID:
XP_012811191
Xenbase:
XB-GENE-1013462
UniProt:
A0A6I8RIL2
LinkDB
All DBs
Position
1:22735896..22820901
Genome browser
AA seq
3110 aa
AA seq
DB search
MATMEKLMRAFESLKSFQQQQVPVVPEEPAPKAKKDPSTNKKDRVNHCLTICENIVAQSL
RNSPEFQKLLGIAMELFLLCSDDAESDVRMVADECLNKVVKALMDSNLPRLQLELYKEIK
KNGAPRSLRAALWRFAELAHLVRPQKCRPYLVNLLPCLTRISKRHEESVQETLAAAIPKI
MAAFGNFANDNEIKVLLKAFIANLKSSSPAIRRTAAGSAVSICLHSRRTQYFYTWLLNVL
LGLLIPVEDEHPTLLILGVLLTLRYLMPLLQQQVKDTSLKGSFGVTQKEADISPSAEQLI
QIYELTLHYTQHRDHNVVTGALELLQQIFRTPPLDLLHVLTTPGSIEQVSVCRDEPYSRS
RSGSIVELIAGGSSTCSPVIARKQKGKIHLGEEEGLDDDLEGKSDAPATPFAATKNEVPS
DVTNLSSTAPGANLEGASHDIITEQPRSQHTLQSDSVDISSSDLASTVTEGDEEDILSHS
SSQISTVQSDTNMELNEGTTQASSPVSDSSQTTTEGPDSAVTPSDSSEIVLDAAESQYSG
MQIGQLQDEEDEGAILHQEEAGEHFGSSSLGLNQTHLLKTMGHSRQSSDSSVERFVPKEE
PVDPGDLENKPSRIKGDIGHYMDKDAAPLIHCVRLLSASFLLTGQKSVLVPDRDVRVSVK
ALAVSCVGAAVALLPESFFSKLYKLPTETTESQEIQYVSDILNYINHGDPQVRGATAILS
GTIVFSVLSKAHFEAETWISKVKANTGNTFSVQDCIPLLQKSLKDESSVTCKLACMAVRH
CIMTLCCSTYSELGLQLIIDLLTLKNSSYWLVRTELLETLAEIDFRLVNFMEARTENLHR
GLHYYTGLLHLQDRVLNNVIISLLGDDDARVRHVAAASLARLVPKLFYNCDQVQADPVVA
AARDQSSIYLKLLMHETQPPSHFAVSTITRIYRGYNIQQSPTDISMENNISKVITAVSHA
LTTSTTRALTFGCCEALCLLSITYPVCTWSIGWHCGYVTSTSAQTSRIQVYKNRGRSFSI
SQQSPSEEPRKSCTAGMSSMILSLLSSAWFPLDLSAHQDALVLVGNLLAATAPKSLKNPW
TSEEETSQGANKQEEPWPALGDRAVVGMVDQLFIHLLKAINICAHVIDDITPGPVVKATL
PSLTNPPSLSPIRRKGKERDTAEQAAVPLSPKKSGEATPASRQTEASGPAQTSKSIGSFY
HLPSYLKLYDVLKATYANYKVSLDLQNNNEKFGGFLRSALDVLSQILELATLTDIAKCVE
EILGYLKSCFSREPVMATVCVQQLLKTLFGTNLASQFEAMSSNPSKCQGKAQRLGSSNLR
PGLYHYCFMAPYTHFTQALADASLRNMVQADQEQDTSGWFDVLQKVSSQLKNSISNVTKH
RTDKNAIHNHIRLFEPLVIKALKQYTTTTSVQLQRQVLDLLAQLVQLRVNYCLLDSDQVF
IGFVLKQFEYIEVGQFRESEAIIPNVFFFLVLLSYERYHSKQIIGIPKIIQLCDGIMASG
RKAVTHAIPALQPIVHDLFVLRGANKADAGKELETQKEVVVSMLLRLIQYHQVLEMFILV
LQQCHKENEDKWKRLSRQIADVILPMLSKQQMHIDSHDALGVINTLFETLAPSALRPVDM
LLRSMFVVPCTMASVSTVQLWISGILAILRVLISQSTEDIVLSRIQELSLSPKLICCQNI
MNLREGDNPLPPEVYPEQSENKPAPEETFSRFLLQLVGILLEDIVYKELKVDLSEQQHTF
YCQQLGTLLMCLIHIFKSGTFRRITNAAMRLFKGDGSNGSFYTLESLNGLVESMFPTHPS
LVLLWCQFLLLINYTNYSWWSEVHQTPKRNSLSSTKLLSPHMSTESDDPDLTSKPGICNR
EIVRRGALILFCDYVCQNLHDSEHLTWLIVNHVQDLINLSHEPPVQDFISAIHRNSAASG
LFIQAIQSRCENLAAPTSLKKTLQCLEGIHLSQSGAVLLLYIDKLLCTPFRVLARMVDTL
ACRRVEMLLAATPQNSISQLPMEELDRMQEYLQSSGLAQRHQRLYSLLDRFRMTVAPDTV
SPLPSVTSHPLDGENQATLETLDPDKEWYVSLVRSQCFTHSDSALLEGAELVNKIPAAER
HSFMTSKNFNVSLLAPCLALGVHQISGEQDSSFFKTTLTVIVDLLSGSVEQLPAGHQVLQ
PLQQVESTAYWEKLSLLFGDSSVYCSLVALCRALAQYLVSLPKLPAEFHIQQEKEVDFVK
FMVLCVEAISWHLVHEQVPLSMDLQAVIDYCCLTLQQPALWNLLASSEYVTHACSLIMCV
RFILEAVAVEPGDQLLSPERRKNKMSEDSEEDQVDSSEQKHVFIKTACEMMAEMVESLQT
ILVFGHQKNRNFSAFLTPVFRNIIISLARLPLVNSYTRVPPLVWKLGWAPKWGGEFGTSL
PEIPVEFLQEKEVFREFIYCINTLGWTSRTQFEETWATLLGVLVTQPMVMDQDENQQEED
TERTQINVLAVQAITSLVLSAMTITVAGNPAISFLEQQPRNKSLKALDTRFGRKLSVVRG
IVEEEIQAMVSKRDNIATHHSCQAWDPVPSLSAPTTGTLINQERLLLQINTEREIGNMSY
KLGQVSIHSVWLGNNITPLRQEELDEDEEDENENPTPSSPPMSPINSRKHRAGVDIHSCS
QFLLELYSQWILPTNTGKKTPAILISEVVRSLLTVSDLFTERNQFEMMYTALTELQKQHP
SEDEILNQYLVPAICKAAAVLGMDKVIAEPVSRIIETTLRSTHMPSRIGALHGILYILEC
DLLDDTAKQLIPVISDYLLSNLRGIAHCVNLHNQQHVLVMCATAFYLIENYPLDVGPEFT
SGIIQMCGVMVSGSEESTPSMVYHCVMRGLERLLLSEQLSRLDGEALVKLSVDRVNMHSP
HRAMTALGLMLTCMYTGKEKISPGRATEPSPAAPDSESVIVAMERVSVLFDRIRKGFPFE
ARVVARILPQFLDDFFPPQDVMNKVIGEFLSNQQPYPQFMATVVYKVFQTLHATGQSSMV
RDWVMLSLSNFTQRTPVAMAMWSLSCFFVSASTSKWISAILPHVISRMGKSEPVDVNLFC
LVAIDFYKHQIDEELDRRSFQSVFELVASPGSPYYRLLLCLQNVHKITVF
NT seq
9333 nt
NT seq
+upstream
nt +downstream
nt
atggccaccatggagaagctgatgagggcgtttgagtctcttaagtcctttcagcagcag
caagtaccggtggtacccgaagagccggcacccaaagcgaagaaagatccttcaacaaac
aagaaagatcgtgtcaatcactgtctaacaatttgtgaaaacattgttgcacagtcttta
aggaattctcccgagttccagaagctgctgggtattgccatggagctgttcctactgtgc
agcgatgacgcagagtctgatgtgcggatggttgctgatgaatgcctcaataaagtggtg
aaggctttaatggactctaatctcccgaggctgcagttagaactttacaaggaaattaaa
aagaatggtgcaccacgaagcctgcgagctgctctctggagatttgctgagcttgctcac
ctggttcggccccagaaatgcagaccatacctggtaaatctgcttccctgcctcacaaga
ataagcaaacgacacgaggagtctgtgcaggagactctagctgctgctatccccaagatc
atggccgcctttggcaactttgcaaatgacaatgaaatcaaggttcttctgaaagcattt
atagcaaatctgaaatctagttctcccgctatccgccgaacagcagctggttctgcagtg
agcatctgtctgcattctcgaagaactcagtacttctacacatggcttctcaacgtgctc
ttgggtcttcttatccctgttgaggatgaacacccaacgcttttaattctgggagtttta
ctaacactacggtacctgatgccactactacaacagcaggtgaaagacacaagtctgaaa
ggcagcttcggtgtaacacagaaagaggcggacatttctccttctgccgagcagctcata
cagatttatgagttgaccttacattatacgcaacacagggatcacaatgttgtgactggt
gctctggagttactacagcagatatttagaacaccacccctggaccttctccatgtactg
accacacctggcagtatagagcaggtcagtgtttgcagagatgagccatacagccggagc
cggagtgggagtatagtggaattaatagctggtgggagttctacctgcagccctgtaatt
gcaaggaagcaaaaaggcaaaatacatttgggagaagaggaagggttagatgatgattta
gaaggaaaatctgatgcccctgctacaccttttgctgctacaaagaatgaagtcccttct
gatgtgaccaacctctcttcgacagcacctggtgccaatcttgaaggcgcatctcatgac
atcatcacggagcagccacgatcccagcacacactgcagtcagactccgtggatataagc
agttcggacttggctagcaccgtcactgaaggggatgaagaggacattctaagtcatagt
tccagccaaatcagcactgttcagtctgatacaaatatggaactgaatgagggaaccacc
caggcttcctccccagtgagcgatagctcgcaaaccaccacagaaggtccagactctgct
gtgaccccttcggacagttctgaaattgttttagatgctgctgaaagccagtattccggg
atgcagattgggcagctgcaagatgaggaggatgaaggagctattcttcaccaagaagaa
gccggggaacattttgggagttcttccttaggtttaaatcaaactcatcttttaaaaacc
atgggccatagccgacagtcctctgacagtagcgtggagcgctttgtacccaaggaggaa
cctgtggatcctggcgatctggaaaacaaaccttcaagaataaagggagatattgggcac
tatatggataaagatgctgctcctttaattcactgcgtacgactcctgtcagcttccttt
ctgctcactggacagaaaagtgtgcttgttccagacagagacgtacgggtcagtgtaaaa
gccttggctgtcagttgtgttggggcagctgttgctttgttaccagaatctttcttcagc
aaactgtacaaactgcccactgaaactactgaatctcaagaaatacagtatgtttcagat
attcttaattatattaaccacggagatcctcaggttagaggagctacagcaatcctttcc
gggaccattgtcttttctgtgcttagtaaagcacactttgaagcagaaacctggatttca
aaggttaaagccaatacaggcaatacgttttctgtgcaagattgcattccattactgcaa
aaatccctgaaggatgaatcttctgtgacatgcaagttggcttgtatggctgtcaggcac
tgcataatgactctgtgctgcagcacatacagtgagctgggattgcaactcattattgat
ctgctcaccctgaagaacagctcctactggcttgtcagaaccgagcttttggaaactctc
gcagagattgattttagattagtcaattttatggaagcaagaactgaaaatctgcacaga
ggacttcattattacactgggttgttgcatcttcaggatcgggtactgaacaatgttatc
atcagccttcttggggatgacgatgccagagttagacatgtagcagcagcttccttagca
aggcttgtgcccaaattgttttacaattgcgaccaggtccaggccgatcctgttgtagca
gcagcaagagaccaaagcagtatttatcttaaacttctcatgcatgagacccaacctcca
tcccactttgcagtcagcactatcacaaggatctacagaggatacaatatacagcaaagc
ccgactgatatctccatggaaaacaatatttctaaagtcatcactgctgtctcccatgca
ctaaccacatcgaccacgcgtgcacttacgtttggttgctgtgaggcgttgtgcctccta
tcaataacctatccagtgtgcacttggagcataggatggcactgtgggtatgtaaccagt
accagtgctcaaacctcccgaatacaggtttacaagaaccgtggacgttcctttagcatc
tcacaacaaagcccatcagaagaacccaggaaaagctgcactgctggaatgtctagtatg
attctctctctgctctcctctgcctggtttcctttagacctttcagcacatcaggatgcc
ttggtactggtcggaaatctgctagcagctactgcacccaaatcattgaaaaatccctgg
acgtcggaagaggaaacaagccagggggcaaataaacaagaggagccttggccagctctg
ggtgacagggcagtggtgggcatggtggatcaactcttcattcacttactgaaggcaata
aacatatgtgctcatgtgattgatgatattactcctggaccagttgttaaggctactctt
ccctctcttaccaatccgccatccttaagcccaatccgccggaagggaaaggaaagagat
actgctgagcaagctgctgttccattaagcccaaaaaaatctggtgaagccaccccagct
tcccgtcaaacagaggcttcaggtcctgcacagacaagcaaatctattggtagtttctac
catctcccatcgtatctcaaattatatgatgtgttgaaagctacgtacgccaactataag
gtatcattagatctgcaaaataataatgagaagtttgggggttttctgcgctcagctctg
gatgttctgtcccaaatcttggagcttgccaccctcacagatattgcgaagtgtgttgaa
gaaatattgggatatctgaagtcctgcttcagtcgggaaccagtaatggcaactgtttgt
gtccagcaactgctgaaaaccctttttggaaccaacttggcttctcagttcgaggcaatg
tcatcaaaccccagtaaatgtcaagggaaagctcaacgcctgggctcatccaaccttcgc
ccagggctgtaccattactgcttcatggcgccgtacacccatttcactcaggcactggca
gatgcaagtctaagaaacatggtgcaggctgaccaagaacaggacacatcagggtggttt
gatgtccttcagaaggtttcctctcagctgaaaaacagcatcagcaatgtcactaagcat
cgaacagacaagaatgcgatccataatcacatccgtctgtttgagcctttggttataaaa
gccctgaagcagtatacaacaaccacctcagttcagcttcaaaggcaagttctggatctc
ttggcacaactggtccagctccgcgtcaactattgcctccttgactctgatcaagtgttt
attggatttgtgttgaagcagtttgaatacattgaagtgggccagttcagggaatcggaa
gccatcattcccaatgttttcttcttcttggtacttttgtcatatgagcgttaccactca
aagcagatcattgggattcccaaaatcatccagctgtgtgacggcatcatggctagtggg
aggaaagcagtaacacatgccatccctgctcttcagcccatcgtccatgatttatttgta
ctgaggggagcaaacaaagccgatgctgggaaagagcttgaaacccagaaggaggtggtg
gtatcgatgcttctgaggcttattcagtaccatcaggtgctggaaatgttcatcttggtt
ctgcagcagtgccacaaagagaacgaagacaaatggaaaaggctgtcgcggcagattgca
gatgtcattctaccaatgctgtcaaagcagcagatgcatatagattctcatgatgctctc
ggcgttataaatactttattcgaaactttggccccttcagctcttcggccggtagacatg
ctattaagaagtatgtttgtcgtaccgtgcactatggcctcagtgagcaccgtccagctg
tggatatcagggatcctggctattctcagagttctcatctctcagtccacagaggatatt
gttctgtctcgtatacaggagctctccttgtcgccaaagcttatctgctgtcagaatatc
atgaaccttagggaaggggataatcctttacctccagaagtttatcctgagcagagtgag
aataagccggcccctgaggaaaccttctctcggttcctgcttcagttggtgggcatcctt
ttggaggacattgtgtacaaggagctaaaggtggatttgagtgagcagcagcacactttc
tattgccaacagctgggcaccttactcatgtgcttgattcacatcttcaaatcaggcaca
ttccggcgcatcacaaatgcagcaatgaggcttttcaaaggagatggtagtaatggcagc
ttctacaccttagagagcctgaatggccttgtggaatctatgtttcccactcatccatct
ctcgtgctcctttggtgccagttcctgctccttatcaactataccaactacagctggtgg
tctgaagtgcaccaaactcccaaaaggaacagcttgtccagcaccaaactgctgagccct
catatgtcaacagagagtgatgatccagatctgacttccaaacctggcatttgtaatagg
gaaatagtgcgcaggggagcgctgattctgttttgtgattatgtgtgccagaatctgcat
gactcggaacatctgacctggctcatagtcaatcacgtccaggatctaataaatctctcg
catgaacctccagttcaggacttcatcagtgcaatccacagaaattctgccgccagtggc
ctcttcattcaagccatccagtcccgctgtgaaaacctggcagcaccgacctctctaaag
aaaacactgcagtgcttggaagggatccatctcagtcagtccggcgcagtgttgttgctg
tacattgacaagctgctctgtactcctttccgtgtgctggctcgcatggtagacacgtta
gcttgtcgacgagtggaaatgctcttggctgctactcctcagaatagcatttctcagttg
ccgatggaagaactggataggatgcaggagtatttacagagcagtgggttagcacaaaga
caccaaagactttattctctgctggacagatttcggatgaccgtagcaccagatacagtt
agccccttaccttcggtaacttcacacccgctggacggggaaaatcaggcaacgctggag
acgttggaccctgataaggaatggtacgtgtctctggttcgatcccagtgctttacccat
tcagattctgctctgctggaaggagcagaactggtgaataaaatccctgcggcagaacgg
cactccttcatgaccagcaagaatttcaatgtgagcctgctcgctccctgcttagccctg
ggtgtacaccaaatctcaggagaacaggacagctcattctttaagacaacactgacagtg
attgtggatctcctatctggcagtgtggagcagctaccagcaggacatcaggttctgcag
cctctgcagcaggtggaaagcactgcctactgggagaagctcagccttctgtttggtgac
agcagcgtgtactgctctctggtggccctctgcagagctctcgctcagtacttggtttcc
ctgcccaaactgcctgcagaatttcacatccaacaggaaaaggaagtggactttgtgaag
tttatggtgctctgtgttgaggcgatatcttggcatttggtacatgagcaagtcccactg
agtatggatctgcaggctgtaattgactattgctgcctgactctccagcagccggcattg
tggaaccttttggcttcctcagagtatgtgacacacgcctgttccctaatcatgtgtgta
aggttcatcctcgaggcagttgcagtagaaccaggtgaccagctcctcagtccagaaagg
agaaagaacaaaatgtcagaagattcagaagaagaccaagtagattccagtgagcaaaaa
cacgtgtttatcaagacggcctgtgaaatgatggctgaaatggtagaatccctgcagacc
attctagtgtttggccaccaaaagaacagaaacttttcagcatttctcacccctgtcttt
agaaatattatcattagcctggcacggttgcctctagtcaatagttacaccagagttcct
cctttggtctggaaacttggatgggctccgaaatggggcggagaatttggaacttctctt
cctgaaatccctgtagagttcctacaagaaaaagaagtttttagagagtttatctactgt
attaatacactgggatggaccagtcgtactcagtttgaggagacatgggccacccttctt
ggagttctggtgacacagccaatggtaatggaccaagacgagaatcagcaagaggaagac
acagagaggacccagatcaatgtcctggcagtacaagccatcacatctttagtcctgagc
gccatgaccattactgtagcgggcaaccctgccatcagtttcctagagcagcagccaagg
aacaagagcctgaaagcactggacacaaggtttggcaggaaactgagcgttgttagagga
atagtagaagaggaaatacaagccatggtctctaagagggataatattgcaactcaccac
tcgtgccaagcgtgggatcctgttccttccctgtctgctccaacaacaggtactctgatc
aaccaagagaggctcttgctgcagataaacactgagagggagatcgggaacatgagctat
aaattagggcaggtctccattcattccgtctggctggggaataacatcaccccgctgagg
caagaagagcttgatgaagacgaggaagatgagaatgaaaaccctactccttcctcacca
cccatgtctccaataaactccaggaaacaccgggccggtgtagacatacactcttgctcc
cagttcctgttagagctgtacagccagtggatccttcccaccaacacagggaaaaagact
ccagccattctgatcagtgaggtggtgagatcgctcctgacggtgtctgatttatttact
gagaggaaccagtttgagatgatgtacacagcactgacagagctgcagaaacaacacccg
tcggaagatgaaattctcaaccagtatctggtgccggccatctgcaaagctgccgctgtg
ctgggaatggacaaagttattgcagagccagtgagccggataatagagacaacactaaga
agcacccatatgccgagccgtatcggagcactacatgggatactgtacatcctagagtgt
gacctgctcgatgacaccgcaaagcagctcatacccgtcatcagcgactatctgctttcc
aacctgagaggcatagcacactgtgtgaatctgcataaccagcagcacgtcctcgttatg
tgcgccacggcattctacttaattgagaactatcccctggatgtaggaccagagttcacg
tcaggaatcatacagatgtgcggcgtgatggtctctgggagtgaagagtctacgccctcc
atggtgtaccactgtgtcatgcgaggattggagcgcctcctactgtcggagcagctgtcc
cggctggatggggaagcgctagtgaaactgagtgtggacagagtgaatatgcacagccct
caccgggcaatgacggcactaggactgatgctcacctgcatgtacacaggaaaagagaaa
atcagcccaggccgcgccacagagcccagtcctgcagctccagacagcgagtctgtcatt
gtagccatggagagagtctctgtgctgtttgacaggataaggaaaggattcccctttgaa
gcccgggtggtagcgaggatccttccacagtttttagatgatttcttccccccacaagac
gtgatgaacaaggtcatcggggagtttttatccaaccagcagccctacccacagttcatg
gcgacggttgtttacaaggtgtttcagacattgcatgccaccgggcagtcgtctatggtg
cgtgattgggtcatgctgtctctctccaacttcacccagagaacccccgttgccatggcc
atgtggagcctttcctgcttttttgtcagtgcttccaccagcaagtggatttctgccatt
ctcccacacgtcattagcagaatgggaaagtcggagccggtagatgtgaatttattttgc
ctggtggccatagacttctacaaacatcagattgatgaagaactggaccggagatccttc
cagtcagtgtttgagctggtcgcctcccccgggagcccctattaccggctgctcttgtgt
ttacagaacgtgcataagatcactgtgttctga
DBGET
integrated database retrieval system
