Xenopus tropicalis (tropical clawed frog): 493300
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Entry
493300 CDS
T01011
Symbol
exosc8
Name
(RefSeq) exosome complex component RRP43
KO
K12586
exosome complex component RRP43
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
493300 (exosc8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xtr03019
]
493300 (exosc8)
Messenger RNA biogenesis [BR:
xtr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
493300 (exosc8)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
DUF8103
Motif
Other DBs
NCBI-GeneID:
493300
NCBI-ProteinID:
NP_001007919
Xenbase:
XB-GENE-961980
UniProt:
Q66KK0
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All DBs
Position
2:complement(151675401..151685163)
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AA seq
276 aa
AA seq
DB search
MAAGFKTVEPLEYYRKFLKEACRPDGRELTEFRTTTINVGSITTADGSALVKLGNCTVLC
GVKAEFTAPPADAPNKGYVVPNVDLTPLCSSQFRPGPPGEEAQVASQFIADVIDNSQMLL
KEDLCIAHGKLAWVLYCDLICLDYDGNLLDTCMCALVAALQNVRLPSVKINEETGLAEVN
LKTKHALKILKHPVATSFAVFDDTFLLVDPTGEEEGLASGLLTVVTDEDERLCATRKPGG
SALAAEKLQECISRAITRHKEVTNLLQEALASVKSE
NT seq
831 nt
NT seq
+upstream
nt +downstream
nt
atggcggctggtttcaagacggtggaacctttagagtattacagaaaattcctgaaggag
gcttgtcggccggacggtcgagaactcactgagtttaggacaacgaccataaatgttggt
tccattaccacagcggatggttcagctttagtgaagcttgggaattgcactgtactatgt
ggggttaaagcggagtttacagctcctcccgcggatgcccccaataaaggatatgttgtt
ccaaatgtggatcttacacccttgtgctcctctcagtttcggcctggtcccccaggggaa
gaggctcaagttgccagtcagttcatagcagatgttattgacaattcccagatgctcctg
aaagaagacttgtgcatcgcacatggcaagctagcatgggttctgtactgtgatctcata
tgtctcgattacgatggaaaccttcttgatacttgcatgtgtgctttggttgctgcttta
cagaatgtaagattgccatctgttaaaataaacgaggagactggtttagcagaagtcaat
ttgaaaacaaaacatgctctgaaaatcctgaaacaccccgttgcaacatcatttgcagta
tttgatgacacattccttctggtggatcccacaggggaagaggagggcttggccagcgga
ctactcactgttgtgactgatgaagatgaaaggttatgtgccactcgaaaaccaggtggg
agtgcccttgcagcagagaagctccaggagtgcatcagtcgagccatcacgagacacaaa
gaggtgacgaaccttctgcaagaggcgctggccagtgtcaagtcagaataa
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