Xenopus tropicalis (tropical clawed frog): 493312
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Entry
493312 CDS
T01011
Symbol
cpsf4
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 4
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
493312 (cpsf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xtr03021
]
493312 (cpsf4)
03019 Messenger RNA biogenesis [BR:
xtr03019
]
493312 (cpsf4)
Transcription machinery [BR:
xtr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
493312 (cpsf4)
Messenger RNA biogenesis [BR:
xtr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
493312 (cpsf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
zf-CCCH_3
Torus
zf-CCCH_2
zf-CCHC
zf-CCCH_12
zf-CCCH_4
zf-CCCH_RBM22
zf-CCHC_3
zf-C3H1
Nab2-like_zf-CCCH_
Motif
Other DBs
NCBI-GeneID:
493312
NCBI-ProteinID:
NP_001007933
Xenbase:
XB-GENE-948302
UniProt:
Q66KE3
LinkDB
All DBs
Position
9:complement(47254085..47264443)
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AA seq
269 aa
AA seq
DB search
MQELIACVDHIRFDLELAVEQQLGAQPLPFPGMDKSGAAVCEFFLKSACGKGGMCPFRHI
SGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESK
IKDCPWYDRGFCKHGPLCRHRHTRRVICVNYLVGFCIEGPNCKFMHPRFELPMGTTEQPP
LPQQTQTQQKQNNNQVLQRSSSLIQLTSQNSPVSQQRSPQTIGVMQSQSGNQGNRGPRPL
DQVTCYKCGEKGHYANRCTKGHLAFLSGQ
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atgcaggagttaattgcttgtgtggatcatatccggttcgatctggaactggccgtggaa
caacagctgggggctcaacccctccctttcccgggcatggacaagtctggggctgctgtt
tgtgagttttttctgaaatcggcctgtggaaaaggcggaatgtgtccgtttagacatatc
agtggggagaagacagtggtctgtaaacattggttacgaggcctttgcaagaagggagac
cagtgtgaatttttgcacgagtatgatatgactaaaatgccagagtgctacttctactcc
aagtttggtgagtgcagtaacaaagagtgcccatttttgcatattgacccggaatcaaag
ataaaagactgcccatggtatgacaggggcttctgtaagcacgggcccctctgtaggcac
cggcatactcgaagagtaatttgtgtcaattacttggtgggattctgtatcgaaggccct
aactgtaaattcatgcatccacgttttgaattacctatgggaaccacagaacagccgcct
ctaccccagcaaacacagactcaacagaagcaaaataataaccaggtgttacaaaggtca
tcctcactcattcagctaacaagccaaaactctcctgtcagccaacaacgttccccacag
acaatcggtgtcatgcagtcacaaagtggcaaccaggggaaccggggacctaggccactg
gaccaagttacctgctataagtgtggtgagaaaggacattatgccaacagatgtacaaaa
ggtcacttggctttcttgagtgggcagtga
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integrated database retrieval system
