Xenopus tropicalis (tropical clawed frog): 493355
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Entry
493355 CDS
T01011
Symbol
smarca5
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5
KO
K11654
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-]
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
493355 (smarca5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xtr03021
]
493355 (smarca5)
03036 Chromosome and associated proteins [BR:
xtr03036
]
493355 (smarca5)
Transcription machinery [BR:
xtr03021
]
Eukaryotic type
RNA polymerase I system
Other transcription-related factors
NoRC (nucleolar remodeling complex)
493355 (smarca5)
Chromosome and associated proteins [BR:
xtr03036
]
Eukaryotic type
Chromatin remodeling factors
CHRAC complex
493355 (smarca5)
RSF complex
493355 (smarca5)
WICH complex
493355 (smarca5)
B-WICH complex
493355 (smarca5)
NORC complex
493355 (smarca5)
BRF complex
493355 (smarca5)
NuRF complex (fruit fly)
493355 (smarca5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
SLIDE
HAND
Helicase_C
ResIII
DEAD
HDA2-3
Myb_DNA-binding
DBINO
RRG8
AAA_14
Motif
Other DBs
NCBI-GeneID:
493355
NCBI-ProteinID:
NP_001007993
Xenbase:
XB-GENE-494817
UniProt:
Q66JL4
LinkDB
All DBs
Position
1:complement(59222537..59241703)
Genome browser
AA seq
1049 aa
AA seq
DB search
MSAEGTEQQPAPDTVAKEEKGEAKEAMEVDTGDQAKQEPGGDAVKEEAMEDYELDNEDDD
DSLNKSKEGNEMDPAYEEKRKTDRSNRFEYLLKQTEVFAHFIQPAAQKTPTSPLKMKPGR
PRLKKDEKQDLLSMGDYRHRRTEQEEDEELLTESSKTTNVCTRFEDSPSYVKGGTLRDYQ
VRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRSIPGPHMVLVPKSTLHNW
MAEFKRWVPSLCAICLIGDKDHRAAFVRDVLLPGEWDVCVTSYEMLIKEKSVFKKFNWRY
LVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSAED
FDSWFDTNNCLGDQKLVERLHMVLKPFLLRRIKADVEKSLPPKKEIKIYVGLSKMQREWY
TKILMKDIDILNSSGKTDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDMHLVTNSGK
MVVLDKLLPRLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHEERQDSIIA
YNAPGSSKFIFMLSTRAGGLGINLATADVVIIYDSDWNPQVDLQAMDRAHRIGQTKTVRV
FRYITDNTVEERIVERAEMKLRLDSIVIQQGRLVDQNLNKLGKDEMLQMIRHGATHVFAS
KDSEITEEDINAILERGEKKTAEMNEKLSNMGESSLRNFTVDNESSVYNFEGEDYREKQK
MAFTEWIEPPKRERKANYAVDAYFREALRVSEPKVPKAPRPPKQPNVQDFQFFPPRLFEL
LEKEILYYRKTIGYKVPRNPDLPNAAQAQKEEQLKIDEAEPLNDEELEEKEKLLTQGFTN
WNKRDFNQFIKANEKWGRDDIENIAREVEGKTPEEVIEYSAVFWERCNELQDIEKIMAQI
ERGEARIQRRISIKKALDTKIGRYKAPFHQLRISYGTNKGKNYTEEEDRFLICMLHKLGF
DKENVYDELRQCIRNSPQFRFDWFLKSRTAMELQRRCNTLITLIERENLELEEKEKAEKK
KRGPRPSSAQKRKVDGTPDGRGRKKKLKL
NT seq
3150 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcggaaggcaccgagcagcagccggctccggacaccgtagcgaaagaggaaaaa
ggagaagcaaaggaggctatggaagtagatacgggcgatcaggcgaaacaagagccgggc
ggagacgcagttaaagaggaagcgatggaggattatgagcttgataatgaagatgatgac
gattctcttaataaatcgaaagaaggcaatgagatggatccagcttatgaagaaaagagg
aaaactgaccgctcaaacagatttgagtaccttttgaaacagacagaagtgtttgcacat
ttcattcaaccagctgcacaaaagaccccaacctcgcctttaaaaatgaaaccaggacgt
cctcgcctaaagaaagacgagaaacaagatttgctgtctatgggagattatcgccatcgc
cggacagaacaggaggaggatgaggaacttttaactgaaagttccaaaaccacaaatgtt
tgcaccagatttgaagactccccatcatatgtaaaaggtggtacactaagagattaccaa
gtcagaggattaaattggttaatatcgctgtacgagaatggcataaatggaattttggct
gatgaaatgggtctaggaaagactttacagacaatcagtcttttggggtatatgaagcac
tacagaagtatccctgggcctcacatggtcttggttccaaagtcaaccttgcacaactgg
atggcagagttcaaaagatgggttccttcactttgtgctatttgtcttattggtgacaaa
gatcatagagctgcatttgtccgtgatgtactcctaccaggagagtgggatgtgtgtgta
acatcttatgaaatgttaatcaaggaaaagtctgtttttaaaaagtttaactggagatac
ctagttattgatgaagctcacaggatcaaaaatgagaaatctaagctgtctgaaattgtg
agagagtttaagacaacaaatcgtcttttactcacagggacaccacttcaaaataatcta
catgagctctgggcgttgctgaactttctgttaccagatgtttttaattctgctgaggac
tttgactcttggttcgataccaacaactgtttaggagatcagaaattagttgaacgtctt
catatggttttaaagcccttcctcctccgccgtataaaggctgatgtggaaaaaagtcta
ccccccaaaaaggaaattaaaatatacgtgggtctcagcaaaatgcaacgtgaatggtat
acaaagattttaatgaaggatatagatattttgaattcttcgggaaagactgacaaaatg
cgactgctgaatatcttgatgcaacttaggaaatgttgcaatcatccttacctttttgat
ggtgctgagcctggtccaccctacacaacagatatgcatttggtgacaaatagtggcaaa
atggtggtcttagacaaactgctgcccagacttaaggaacaaggttcacgtgtactaata
ttcagccagatgacaagagttttagacatcctagaagattactgcatgtggaggaattat
gaatactgtcgactcgatgggcaaacaccacatgaagaaagacaagattctatcatcgca
tataatgcacctggcagttcaaaattcatttttatgctgagcacacgcgcaggaggcctt
ggaataaatcttgctacagctgatgttgttattatatatgattcagactggaatccacaa
gttgatcttcaggctatggatagagcacacagaattgggcaaactaaaactgttcgtgtg
ttcagatacataacggataatacagttgaagagcgtattgtggaacgtgctgaaatgaaa
ctgcgcttagattcaatagttattcagcaaggtagattagtggaccaaaacctaaataaa
ttagggaaggacgaaatgcttcaaatgattcgacatggtgctactcatgtatttgcatca
aaggatagtgaaatcacagaggaagacattaatgcaatcttggagagaggggagaagaag
actgcagaaatgaatgagaaactctcaaacatgggtgaaagttcccttagaaacttcacg
gtggataatgaatccagtgtttataactttgaaggtgaagattacagagaaaagcaaaag
atggcatttacagagtggattgaaccaccgaaaagggaacgaaaagctaattacgcggta
gatgcgtatttccgcgaagcactccgtgttagcgagccaaaagtaccaaaggctcccaga
cccccaaaacagccaaatgttcaagattttcagtttttccctccacgtctatttgagtta
ttggaaaaagaaattctctattacaggaaaacaattggctacaaggtaccacgtaatcct
gatctgccaaatgcagcacaagcacaaaaggaagaacaactaaaaattgatgaggcagag
cccctcaatgatgaagagttagaggagaaagagaaattgttaactcagggtttcacaaac
tggaataagagagatttcaaccagtttattaaggctaatgagaaatggggtcgtgatgat
attgaaaatattgcgcgggaagtggaaggcaagacaccagaggaagtcattgagtattca
gcggtcttctgggaaaggtgcaatgagcttcaagatatcgagaagataatggctcaaata
gaaaggggagaagcgaggatacagaggaggattagcataaagaaagctctagacacaaag
attggaagatacaaagcacctttccaccaactgaggatttcgtatggtacaaacaaagga
aaaaactacactgaggaagaggatcgttttctcatttgcatgttacacaagctaggtttt
gataaggaaaatgtgtatgatgaactgcggcagtgtatacggaactctccccagttcaga
tttgactggttcttaaaatcaagaacagcaatggagcttcagcgaagatgcaatacctta
atcactttaattgaaagagagaaccttgaactcgaggaaaaggaaaaagctgagaagaag
aaacgtggaccaaggccttcatcggctcaaaaacgaaaggtggatggaacacctgatggc
agaggaagaaagaagaaactgaagctctga
DBGET
integrated database retrieval system
